Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3188467..3188738 | Replicon | chromosome |
| Accession | NZ_CP038374 | ||
| Organism | Escherichia coli O157:H7 strain F3113 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3188505..3188608 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3188467..3188738 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3160_RS15520 | 3185624..3187063 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E3160_RS15525 | 3187181..3187417 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E3160_RS15530 | 3187522..3187713 | + | 192 | WP_001296140.1 | YebW family protein | - |
| E3160_RS15535 | 3187714..3188370 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 3188467..3188738 | + | 272 | - | - | Antitoxin |
| - | 3188505..3188608 | - | 104 | - | - | Toxin |
| E3160_RS15540 | 3188766..3189107 | - | 342 | WP_000976483.1 | YebY family protein | - |
| E3160_RS15545 | 3189120..3189992 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| E3160_RS15550 | 3189996..3190370 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| E3160_RS15555 | 3190509..3190739 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E3160_RS15560 | 3190841..3191497 | + | 657 | WP_000011645.1 | carbon-nitrogen hydrolase family protein | - |
| E3160_RS15565 | 3191521..3192183 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T122128 NZ_CP038374:c3188608-3188505 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT122128 NZ_CP038374:3188467-3188738 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
