Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-HTH_XRE
Location 1759196..1759901 Replicon chromosome
Accession NZ_CP038374
Organism Escherichia coli O157:H7 strain F3113

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag E3160_RS08110 Protein ID WP_000539518.1
Coordinates 1759515..1759901 (-) Length 129 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag E3160_RS08105 Protein ID WP_001280945.1
Coordinates 1759196..1759525 (-) Length 110 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E3160_RS08090 1754353..1755264 + 912 WP_001236044.1 glutathione ABC transporter permease GsiD -
E3160_RS08095 1755442..1757790 + 2349 WP_000950333.1 EAL domain-containing protein -
E3160_RS08100 1757798..1759126 + 1329 WP_000086905.1 GGDEF domain-containing protein -
E3160_RS08105 1759196..1759525 - 330 WP_001280945.1 DNA-binding transcriptional regulator Antitoxin
E3160_RS08110 1759515..1759901 - 387 WP_000539518.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
E3160_RS08115 1760127..1761452 - 1326 WP_000049367.1 30S ribosomal protein S12 methylthiotransferase RimO -
E3160_RS08120 1761665..1762048 + 384 WP_000497137.1 biofilm formation regulator BssR -
E3160_RS08125 1762159..1763274 + 1116 WP_000554959.1 aldose sugar dehydrogenase YliI -
E3160_RS08130 1763271..1763897 - 627 WP_001295292.1 glutathione S-transferase GstB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-2

(1-124)

Antitoxin

Cro/C1-type helix-turn-helix domain

(53-94)


Sequences

Toxin        


Download         Length: 129 a.a.        Molecular weight: 14251.37 Da        Isoelectric Point: 9.7113

>T122122 WP_000539518.1 NZ_CP038374:c1759901-1759515 [Escherichia coli O157:H7]
MGVYKARQFSQSTKKLGIHDKVLMAAAEEVMQGIWEADLGSGVIKKRLPLQQGKSGGARTIIFFKSANHVFFYDGWSKSG
LSSKGSKEIEDDELAAYKKMANAFLAFSNKQIEDLIETGFLIEVKNER

Download         Length: 387 bp

>T122122 NZ_CP038374:c1759901-1759515 [Escherichia coli O157:H7]
ATGGGTGTGTATAAGGCAAGGCAATTCAGCCAAAGCACGAAAAAACTTGGTATTCACGATAAAGTTCTCATGGCTGCCGC
TGAAGAAGTGATGCAAGGCATATGGGAGGCTGATTTAGGTAGCGGTGTCATCAAAAAACGGTTACCCCTCCAACAAGGAA
AGAGTGGTGGAGCCAGAACAATTATCTTTTTTAAATCAGCAAATCATGTGTTTTTTTATGATGGTTGGTCCAAGAGTGGT
CTAAGCAGTAAAGGAAGCAAAGAAATCGAAGATGATGAACTGGCAGCCTACAAAAAAATGGCAAATGCATTTCTGGCCTT
TAGCAATAAGCAAATAGAGGATTTGATCGAAACTGGCTTCTTGATTGAGGTGAAAAATGAGCGATAA

Antitoxin


Download         Length: 110 a.a.        Molecular weight: 11982.08 Da        Isoelectric Point: 10.0101

>AT122122 WP_001280945.1 NZ_CP038374:c1759525-1759196 [Escherichia coli O157:H7]
MSDKLQMMLEDAKELNALGLMSDSEVDAIAVMVKAREVSARIAKVKSMTGEEIKAIRTRYGMSQSVLAHTMGMSKESVSK
WERNEIKPSGPALRILNTLAIKGPEVFAK

Download         Length: 330 bp

>AT122122 NZ_CP038374:c1759525-1759196 [Escherichia coli O157:H7]
ATGAGCGATAAATTACAAATGATGCTGGAAGATGCAAAGGAACTGAATGCACTGGGCCTGATGTCTGATAGTGAGGTTGA
TGCCATTGCCGTCATGGTCAAAGCCCGTGAAGTCAGCGCCCGTATAGCCAAAGTCAAATCAATGACGGGTGAAGAGATCA
AAGCCATCCGCACCCGATACGGCATGTCACAATCCGTGCTGGCACATACAATGGGAATGTCAAAAGAAAGTGTCTCGAAA
TGGGAACGTAATGAAATAAAACCGAGCGGCCCGGCACTACGTATTTTGAATACATTGGCAATAAAAGGGCCGGAAGTTTT
TGCAAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References