Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2192979..2193250 | Replicon | chromosome |
| Accession | NZ_CP038342 | ||
| Organism | Escherichia coli O157:H7 strain H2495 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2193109..2193212 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2192979..2193250 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3163_RS10820 | 2189534..2190196 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| E3163_RS10825 | 2190220..2190876 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| E3163_RS10830 | 2190978..2191208 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E3163_RS10835 | 2191347..2191721 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| E3163_RS10840 | 2191725..2192597 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| E3163_RS10845 | 2192610..2192951 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2192979..2193250 | - | 272 | - | - | Antitoxin |
| - | 2193109..2193212 | + | 104 | - | - | Toxin |
| E3163_RS10850 | 2193347..2194003 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| E3163_RS10855 | 2194004..2194195 | - | 192 | WP_001296140.1 | YebW family protein | - |
| E3163_RS10860 | 2194300..2194536 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E3163_RS10865 | 2194654..2196093 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T121664 NZ_CP038342:2193109-2193212 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT121664 NZ_CP038342:c2193250-2192979 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
