Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2316049..2316320 | Replicon | chromosome |
| Accession | NZ_CP038339 | ||
| Organism | Escherichia coli O157:H7 strain H6437 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2316179..2316282 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2316049..2316320 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3164_RS11640 | 2312604..2313266 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| E3164_RS11645 | 2313290..2313946 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| E3164_RS11650 | 2314048..2314278 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E3164_RS11655 | 2314417..2314791 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| E3164_RS11660 | 2314795..2315667 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| E3164_RS11665 | 2315680..2316021 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2316049..2316320 | - | 272 | - | - | Antitoxin |
| - | 2316179..2316282 | + | 104 | - | - | Toxin |
| E3164_RS11670 | 2316417..2317073 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| E3164_RS11675 | 2317074..2317265 | - | 192 | WP_001296140.1 | YebW family protein | - |
| E3164_RS11680 | 2317370..2317606 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E3164_RS11685 | 2317724..2319163 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T121628 NZ_CP038339:2316179-2316282 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT121628 NZ_CP038339:c2316320-2316049 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
