Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2271233..2271504 | Replicon | chromosome |
| Accession | NZ_CP038336 | ||
| Organism | Escherichia coli O157:H7 strain LSU61 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2271363..2271466 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2271233..2271504 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3165_RS11150 | 2267788..2268450 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| E3165_RS11155 | 2268474..2269130 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| E3165_RS11160 | 2269232..2269462 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E3165_RS11165 | 2269601..2269975 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| E3165_RS11170 | 2269979..2270851 | + | 873 | WP_000879312.1 | copper homeostasis membrane protein CopD | - |
| E3165_RS11175 | 2270864..2271205 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2271233..2271504 | - | 272 | - | - | Antitoxin |
| - | 2271363..2271466 | + | 104 | - | - | Toxin |
| E3165_RS11180 | 2271601..2272257 | + | 657 | Protein_2186 | protein-serine/threonine phosphatase | - |
| E3165_RS11185 | 2272258..2272449 | - | 192 | WP_001296140.1 | YebW family protein | - |
| E3165_RS11190 | 2272554..2272790 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E3165_RS11195 | 2272908..2274347 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2265731..2277061 | 11330 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T121585 NZ_CP038336:2271363-2271466 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT121585 NZ_CP038336:c2271504-2271233 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
