Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/UPF0150(antitoxin)
Location 2684780..2685418 Replicon chromosome
Accession NZ_CP038321
Organism Escherichia coli O157:H7 strain NE1127

Toxin (Protein)


Gene name hicA Uniprot ID S1F9G9
Locus tag E3168_RS13395 Protein ID WP_000813794.1
Coordinates 2685242..2685418 (-) Length 59 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID -
Locus tag E3168_RS13390 Protein ID WP_001270286.1
Coordinates 2684780..2685196 (-) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E3168_RS13370 2679932..2680873 - 942 WP_001251320.1 ABC transporter permease -
E3168_RS13375 2680874..2681887 - 1014 WP_000220402.1 ABC transporter ATP-binding protein -
E3168_RS13380 2681905..2683050 - 1146 WP_000047432.1 ABC transporter substrate-binding protein -
E3168_RS13385 2683295..2684701 - 1407 WP_000760654.1 PLP-dependent aminotransferase family protein -
E3168_RS13390 2684780..2685196 - 417 WP_001270286.1 type II toxin-antitoxin system antitoxin HicB Antitoxin
E3168_RS13395 2685242..2685418 - 177 WP_000813794.1 type II toxin-antitoxin system mRNA interferase toxin HicA Toxin
E3168_RS13400 2685640..2685870 + 231 WP_000494244.1 YncJ family protein -
E3168_RS13405 2685962..2687923 - 1962 WP_001303492.1 23S rRNA 5-hydroxycytidine C2501 synthase -
E3168_RS13410 2687996..2688532 - 537 WP_000429145.1 DNA-binding transcriptional regulator SutR -
E3168_RS13415 2688585..2689796 + 1212 WP_071525382.1 BenE family transporter YdcO -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(5-57)

Antitoxin

Cro/C1-type helix-turn-helix domain

(91-134)


Sequences

Toxin        


Download         Length: 59 a.a.        Molecular weight: 6749.83 Da        Isoelectric Point: 11.2298

>T121458 WP_000813794.1 NZ_CP038321:c2685418-2685242 [Escherichia coli O157:H7]
VKQSEFRRWLESQGVDVANGSNHLKLRFHGRRSVMPRHPCDEIKEPLRKAILKQLGLS

Download         Length: 177 bp

>T121458 NZ_CP038321:c2685418-2685242 [Escherichia coli O157:H7]
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAG
GTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC
AACTCGGTTTGAGTTAA

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15246.63 Da        Isoelectric Point: 4.7386

>AT121458 WP_001270286.1 NZ_CP038321:c2685196-2684780 [Escherichia coli O157:H7]
MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV
LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV

Download         Length: 417 bp

>AT121458 NZ_CP038321:c2685196-2684780 [Escherichia coli O157:H7]
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
GCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCATGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAAGAGAT
TACTCGCCTATTTAACTTGCATCATGCGACAAAAATCGACGCAGTCCAGCTCGCGGCAAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6HPB

Antitoxin

Source ID Structure

References