Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2188474..2188745 | Replicon | chromosome |
| Accession | NZ_CP038295 | ||
| Organism | Escherichia coli O157:H7 strain TB182A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2188604..2188707 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2188474..2188745 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3171_RS10465 | 2185029..2185691 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| E3171_RS10470 | 2185715..2186371 | - | 657 | WP_000011661.1 | carbon-nitrogen hydrolase family protein | - |
| E3171_RS10475 | 2186473..2186703 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E3171_RS10480 | 2186842..2187216 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| E3171_RS10485 | 2187220..2188092 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| E3171_RS10490 | 2188105..2188446 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2188474..2188745 | - | 272 | - | - | Antitoxin |
| - | 2188604..2188707 | + | 104 | - | - | Toxin |
| E3171_RS10495 | 2188842..2189498 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| E3171_RS10500 | 2189499..2189690 | - | 192 | WP_001296140.1 | YebW family protein | - |
| E3171_RS10505 | 2189795..2190031 | - | 237 | WP_001359800.1 | DUF1480 family protein | - |
| E3171_RS10510 | 2190149..2191588 | - | 1440 | WP_001419087.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T121159 NZ_CP038295:2188604-2188707 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT121159 NZ_CP038295:c2188745-2188474 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
