Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 394060..394226 | Replicon | chromosome |
| Accession | NZ_CP038281 | ||
| Organism | Raoultella ornithinolytica strain WLK218 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 394065..394168 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 394060..394226 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4K08_RS05410 | 389646..391079 | + | 1434 | WP_104896312.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E4K08_RS05415 | 391194..391433 | + | 240 | WP_004863958.1 | YebV family protein | - |
| E4K08_RS05420 | 391527..391718 | + | 192 | WP_004863962.1 | YebW family protein | - |
| E4K08_RS05425 | 391724..392368 | - | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| E4K08_RS05430 | 392511..393482 | + | 972 | WP_172412537.1 | VirK/YbjX family protein | - |
| E4K08_RS30615 | 393603..393746 | + | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| - | 394060..394226 | + | 167 | - | - | Antitoxin |
| - | 394065..394168 | - | 104 | - | - | Toxin |
| E4K08_RS05435 | 394325..394663 | - | 339 | WP_015584012.1 | YebY family protein | - |
| E4K08_RS05440 | 394680..395549 | - | 870 | WP_004863974.1 | copper homeostasis membrane protein CopD | - |
| E4K08_RS05445 | 395553..395927 | - | 375 | WP_004863975.1 | CopC domain-containing protein YobA | - |
| E4K08_RS05450 | 396054..396284 | + | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| E4K08_RS05455 | 396363..397022 | + | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| E4K08_RS05460 | 397028..399088 | - | 2061 | WP_137055922.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T120936 NZ_CP038281:c394168-394065 [Raoultella ornithinolytica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT120936 NZ_CP038281:394060-394226 [Raoultella ornithinolytica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
