Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | pmenTA/darT(toxin) |
Location | 6007465..6009191 | Replicon | chromosome |
Accession | NZ_CP038207 | ||
Organism | Pseudomonas sp. S150 |
Toxin (Protein)
Gene name | pmenT | Uniprot ID | - |
Locus tag | E3Z29_RS27920 | Protein ID | WP_096796317.1 |
Coordinates | 6007465..6008109 (+) | Length | 215 a.a. |
Antitoxin (Protein)
Gene name | pmenA | Uniprot ID | - |
Locus tag | E3Z29_RS27925 | Protein ID | WP_134787420.1 |
Coordinates | 6008106..6009191 (+) | Length | 362 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
E3Z29_RS27895 | 6002868..6003680 | + | 813 | WP_027612913.1 | zinc-dependent peptidase | - |
E3Z29_RS27900 | 6003793..6004320 | + | 528 | WP_008052339.1 | inorganic diphosphatase | - |
E3Z29_RS27905 | 6004544..6005290 | + | 747 | WP_027612915.1 | helix-turn-helix transcriptional regulator | - |
E3Z29_RS27910 | 6005799..6006719 | + | 921 | WP_098965795.1 | restriction endonuclease | - |
E3Z29_RS27915 | 6006905..6007468 | + | 564 | WP_134787419.1 | DUF4433 domain-containing protein | - |
E3Z29_RS27920 | 6007465..6008109 | + | 645 | WP_096796317.1 | DUF4433 domain-containing protein | Toxin |
E3Z29_RS27925 | 6008106..6009191 | + | 1086 | WP_134787420.1 | macro domain-containing protein | Antitoxin |
E3Z29_RS27930 | 6009365..6009925 | + | 561 | WP_134787421.1 | hypothetical protein | - |
E3Z29_RS27935 | 6009941..6010375 | + | 435 | WP_134787422.1 | hypothetical protein | - |
E3Z29_RS27940 | 6010399..6011211 | - | 813 | WP_098965801.1 | DUF2135 domain-containing protein | - |
E3Z29_RS27945 | 6011215..6012834 | - | 1620 | WP_134787423.1 | DUF2300 domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 215 a.a. Molecular weight: 24904.56 Da Isoelectric Point: 6.9118
>T120811 WP_096796317.1 NZ_CP038207:6007465-6008109 [Pseudomonas sp. S150]
MIYTNLNPEKALIWRIVHRDNLPWILDNGLHCANSEAKAPQYVNIGNVDLIDKRRFRQVPIAPEGVLADYVPFYFTPFSV
MMQNIHSGWSVQQRGNDEIVILVSSLYRVEELGLPFVFTNAHAYPSWTNYYSDLANLDQIDWSILQRRDFKRDPDDPRKM
ERYQAEALIHQHLPITGLLGIMCHTDAMKVRIEADVAVRGLTLPVHARPKWYFQ
MIYTNLNPEKALIWRIVHRDNLPWILDNGLHCANSEAKAPQYVNIGNVDLIDKRRFRQVPIAPEGVLADYVPFYFTPFSV
MMQNIHSGWSVQQRGNDEIVILVSSLYRVEELGLPFVFTNAHAYPSWTNYYSDLANLDQIDWSILQRRDFKRDPDDPRKM
ERYQAEALIHQHLPITGLLGIMCHTDAMKVRIEADVAVRGLTLPVHARPKWYFQ
Download Length: 645 bp
>T120811 NZ_CP038207:6007465-6008109 [Pseudomonas sp. S150]
ATGATCTATACCAACCTGAATCCAGAGAAAGCTCTGATTTGGCGTATCGTCCATCGCGATAACCTGCCCTGGATTCTGGA
CAACGGTCTGCATTGCGCAAACTCGGAAGCAAAGGCACCTCAGTACGTGAATATCGGCAACGTCGACTTGATCGACAAAC
GCCGTTTCCGTCAGGTGCCTATCGCACCCGAAGGCGTACTGGCCGACTACGTGCCCTTCTATTTCACACCCTTCTCGGTG
ATGATGCAGAACATTCACTCTGGCTGGAGTGTTCAACAACGCGGCAATGACGAGATCGTGATTCTGGTCTCAAGCCTCTA
TCGCGTTGAAGAGCTTGGCCTACCGTTTGTCTTCACAAACGCTCATGCCTACCCGAGTTGGACAAACTACTACAGCGATC
TGGCGAATCTCGACCAGATCGATTGGTCTATCCTTCAACGGCGCGACTTCAAGCGCGATCCTGACGACCCTCGCAAAATG
GAGCGTTATCAGGCTGAGGCGCTGATCCACCAACATTTACCGATTACGGGACTACTGGGCATCATGTGCCACACCGATGC
AATGAAAGTACGCATAGAAGCAGACGTGGCCGTTAGAGGCTTGACGTTGCCGGTCCATGCGCGTCCCAAATGGTATTTCC
AATGA
ATGATCTATACCAACCTGAATCCAGAGAAAGCTCTGATTTGGCGTATCGTCCATCGCGATAACCTGCCCTGGATTCTGGA
CAACGGTCTGCATTGCGCAAACTCGGAAGCAAAGGCACCTCAGTACGTGAATATCGGCAACGTCGACTTGATCGACAAAC
GCCGTTTCCGTCAGGTGCCTATCGCACCCGAAGGCGTACTGGCCGACTACGTGCCCTTCTATTTCACACCCTTCTCGGTG
ATGATGCAGAACATTCACTCTGGCTGGAGTGTTCAACAACGCGGCAATGACGAGATCGTGATTCTGGTCTCAAGCCTCTA
TCGCGTTGAAGAGCTTGGCCTACCGTTTGTCTTCACAAACGCTCATGCCTACCCGAGTTGGACAAACTACTACAGCGATC
TGGCGAATCTCGACCAGATCGATTGGTCTATCCTTCAACGGCGCGACTTCAAGCGCGATCCTGACGACCCTCGCAAAATG
GAGCGTTATCAGGCTGAGGCGCTGATCCACCAACATTTACCGATTACGGGACTACTGGGCATCATGTGCCACACCGATGC
AATGAAAGTACGCATAGAAGCAGACGTGGCCGTTAGAGGCTTGACGTTGCCGGTCCATGCGCGTCCCAAATGGTATTTCC
AATGA
Antitoxin
Download Length: 362 a.a. Molecular weight: 40668.82 Da Isoelectric Point: 6.5078
>AT120811 WP_134787420.1 NZ_CP038207:6008106-6009191 [Pseudomonas sp. S150]
MIRFTQGNLLEAKTEALVNTVNTVGVMGKGIALMFKERFAQNYRLYAAACKAGDVETGKMHVTATNELDGPRWIVNFPTK
RHWRYPSQMAWITEGLHDLRRFLLENDVKSVAVPPLGAGNGGLKWPEVREQIVEVLGDLDVDVLVFEPSSQYLNVAKRDG
VEQLTPARALIAELVRRYWVLGMECSLLEIQKLAWFLERAIEKIPGTENPLNLKFVAHKFGPYANRLEHLLNNLDGSYLH
CDKRISDAGITDVIWFDQDRKTFLQTYLKTEAKEYSQALERTAELIDGFESPFGMELLATVDWLLIRERIAPTVPAVRKA
LMNWDGGSGAAVRKNKLFDDQALGIAITRLTSTSFSPEMAA
MIRFTQGNLLEAKTEALVNTVNTVGVMGKGIALMFKERFAQNYRLYAAACKAGDVETGKMHVTATNELDGPRWIVNFPTK
RHWRYPSQMAWITEGLHDLRRFLLENDVKSVAVPPLGAGNGGLKWPEVREQIVEVLGDLDVDVLVFEPSSQYLNVAKRDG
VEQLTPARALIAELVRRYWVLGMECSLLEIQKLAWFLERAIEKIPGTENPLNLKFVAHKFGPYANRLEHLLNNLDGSYLH
CDKRISDAGITDVIWFDQDRKTFLQTYLKTEAKEYSQALERTAELIDGFESPFGMELLATVDWLLIRERIAPTVPAVRKA
LMNWDGGSGAAVRKNKLFDDQALGIAITRLTSTSFSPEMAA
Download Length: 1086 bp
>AT120811 NZ_CP038207:6008106-6009191 [Pseudomonas sp. S150]
ATGATCAGATTCACCCAAGGCAACCTGCTGGAAGCCAAAACTGAAGCGCTCGTCAACACGGTGAATACCGTGGGTGTAAT
GGGTAAGGGCATCGCACTGATGTTCAAGGAACGCTTTGCGCAGAATTACCGACTATATGCAGCCGCGTGCAAAGCCGGGG
ATGTCGAAACCGGCAAAATGCACGTGACTGCCACCAACGAACTCGATGGACCGCGCTGGATTGTGAATTTCCCCACCAAG
CGCCACTGGCGGTACCCGTCGCAAATGGCATGGATAACTGAAGGCTTGCATGATCTGCGACGGTTTCTGCTTGAAAACGA
TGTGAAGTCCGTCGCCGTTCCTCCGCTGGGCGCTGGTAACGGTGGTTTGAAGTGGCCTGAAGTGCGCGAGCAGATTGTAG
AAGTGCTCGGTGACTTGGATGTCGACGTATTAGTGTTCGAACCCTCCAGTCAGTATCTGAATGTCGCTAAGCGCGATGGC
GTTGAGCAACTCACTCCGGCACGCGCACTGATCGCTGAACTGGTCCGGCGTTATTGGGTTCTGGGCATGGAATGCAGCCT
GCTCGAAATTCAGAAACTGGCTTGGTTTCTTGAACGCGCAATCGAGAAAATTCCAGGTACTGAGAATCCGCTGAACCTCA
AATTTGTCGCTCATAAATTCGGCCCGTATGCCAATCGATTGGAGCATCTGCTGAACAATCTGGATGGCAGCTATCTACAT
TGCGACAAGCGCATCAGTGATGCTGGAATCACCGATGTCATTTGGTTTGATCAAGATCGCAAAACGTTTTTGCAGACCTA
CCTCAAGACCGAAGCTAAGGAATACTCTCAAGCTTTAGAGCGGACGGCTGAATTGATCGATGGTTTTGAGTCACCTTTCG
GCATGGAGTTGCTGGCGACCGTTGATTGGTTGCTGATTCGGGAAAGGATTGCTCCAACCGTTCCTGCGGTACGTAAAGCA
CTGATGAACTGGGACGGTGGGTCCGGAGCTGCGGTGCGTAAAAACAAATTATTCGATGATCAGGCACTAGGAATTGCGAT
CACGCGTCTGACATCCACCAGCTTCAGCCCGGAAATGGCGGCCTGA
ATGATCAGATTCACCCAAGGCAACCTGCTGGAAGCCAAAACTGAAGCGCTCGTCAACACGGTGAATACCGTGGGTGTAAT
GGGTAAGGGCATCGCACTGATGTTCAAGGAACGCTTTGCGCAGAATTACCGACTATATGCAGCCGCGTGCAAAGCCGGGG
ATGTCGAAACCGGCAAAATGCACGTGACTGCCACCAACGAACTCGATGGACCGCGCTGGATTGTGAATTTCCCCACCAAG
CGCCACTGGCGGTACCCGTCGCAAATGGCATGGATAACTGAAGGCTTGCATGATCTGCGACGGTTTCTGCTTGAAAACGA
TGTGAAGTCCGTCGCCGTTCCTCCGCTGGGCGCTGGTAACGGTGGTTTGAAGTGGCCTGAAGTGCGCGAGCAGATTGTAG
AAGTGCTCGGTGACTTGGATGTCGACGTATTAGTGTTCGAACCCTCCAGTCAGTATCTGAATGTCGCTAAGCGCGATGGC
GTTGAGCAACTCACTCCGGCACGCGCACTGATCGCTGAACTGGTCCGGCGTTATTGGGTTCTGGGCATGGAATGCAGCCT
GCTCGAAATTCAGAAACTGGCTTGGTTTCTTGAACGCGCAATCGAGAAAATTCCAGGTACTGAGAATCCGCTGAACCTCA
AATTTGTCGCTCATAAATTCGGCCCGTATGCCAATCGATTGGAGCATCTGCTGAACAATCTGGATGGCAGCTATCTACAT
TGCGACAAGCGCATCAGTGATGCTGGAATCACCGATGTCATTTGGTTTGATCAAGATCGCAAAACGTTTTTGCAGACCTA
CCTCAAGACCGAAGCTAAGGAATACTCTCAAGCTTTAGAGCGGACGGCTGAATTGATCGATGGTTTTGAGTCACCTTTCG
GCATGGAGTTGCTGGCGACCGTTGATTGGTTGCTGATTCGGGAAAGGATTGCTCCAACCGTTCCTGCGGTACGTAAAGCA
CTGATGAACTGGGACGGTGGGTCCGGAGCTGCGGTGCGTAAAAACAAATTATTCGATGATCAGGCACTAGGAATTGCGAT
CACGCGTCTGACATCCACCAGCTTCAGCCCGGAAATGGCGGCCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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