Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1978065..1978336 | Replicon | chromosome |
| Accession | NZ_CP038180 | ||
| Organism | Escherichia coli strain | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1978195..1978298 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1978065..1978336 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4F32_RS09550 | 1974620..1975282 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| E4F32_RS09555 | 1975306..1975962 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| E4F32_RS09560 | 1976064..1976294 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E4F32_RS09565 | 1976433..1976807 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| E4F32_RS09570 | 1976811..1977683 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| E4F32_RS09575 | 1977696..1978037 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1978065..1978336 | - | 272 | - | - | Antitoxin |
| - | 1978195..1978298 | + | 104 | - | - | Toxin |
| E4F32_RS09580 | 1978433..1979089 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| E4F32_RS09585 | 1979090..1979281 | - | 192 | WP_001338167.1 | YebW family protein | - |
| E4F32_RS09590 | 1979386..1979622 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| E4F32_RS09595 | 1979740..1981179 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T120755 NZ_CP038180:1978195-1978298 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT120755 NZ_CP038180:c1978336-1978065 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
