Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2053910..2054181 | Replicon | chromosome |
| Accession | NZ_CP038138 | ||
| Organism | Escherichia coli strain G3X16-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2054040..2054143 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2053910..2054181 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3N82_RS09875 | 2050465..2051127 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| E3N82_RS09880 | 2051151..2051807 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| E3N82_RS09885 | 2051909..2052139 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E3N82_RS09890 | 2052278..2052652 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| E3N82_RS09895 | 2052656..2053528 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| E3N82_RS09900 | 2053541..2053882 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2053910..2054181 | - | 272 | - | - | Antitoxin |
| - | 2054040..2054143 | + | 104 | - | - | Toxin |
| E3N82_RS09905 | 2054278..2054934 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| E3N82_RS09910 | 2054935..2055126 | - | 192 | WP_001296140.1 | YebW family protein | - |
| E3N82_RS09915 | 2055231..2055467 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E3N82_RS09920 | 2055585..2057024 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T120702 NZ_CP038138:2054040-2054143 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT120702 NZ_CP038138:c2054181-2053910 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
