Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1936492..1936637 | Replicon | chromosome |
| Accession | NZ_CP037963 | ||
| Organism | Klebsiella pneumoniae strain SCKP020135 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1936528..1936630 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1936492..1936637 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLQ43_RS09690 | 1931622..1933682 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CLQ43_RS09695 | 1933686..1934345 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| CLQ43_RS09700 | 1934424..1934654 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CLQ43_RS09705 | 1934767..1935141 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CLQ43_RS09710 | 1935145..1936014 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| CLQ43_RS09715 | 1936031..1936369 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1936492..1936637 | - | 146 | - | - | Antitoxin |
| - | 1936528..1936630 | + | 103 | - | - | Toxin |
| CLQ43_RS28425 | 1937006..1937149 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CLQ43_RS09725 | 1937254..1938222 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CLQ43_RS09730 | 1938379..1939032 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| CLQ43_RS09735 | 1939029..1939220 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CLQ43_RS09740 | 1939318..1939557 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CLQ43_RS09745 | 1939673..1941106 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1871691..1949707 | 78016 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T120569 NZ_CP037963:1936528-1936630 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT120569 NZ_CP037963:c1936637-1936492 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
