Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 2510921..2511464 Replicon chromosome
Accession NZ_CP037952
Organism Parashewanella spongiae strain HJ039

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag E2I05_RS09690 Protein ID WP_121855187.1
Coordinates 2511192..2511464 (+) Length 91 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag E2I05_RS09685 Protein ID WP_121855189.1
Coordinates 2510921..2511190 (+) Length 90 a.a.

Genomic Context

E2I05_RS09680E2I05_RS09685E2I05_RS09690E2I05_RS09700E2I05_RS09710E2I05_RS09670E2I05_RS09675E2I05_RS09695E2I05_RS22015E2I05_RS09705
Location: 2508397..2510460 (2064 bp)
Type: Others
Protein ID: WP_121855188.1
Location: 2510921..2511190 (270 bp)
Type: Antitoxin
Protein ID: WP_121855189.1
Location: 2511192..2511464 (273 bp)
Type: Toxin
Protein ID: WP_121855187.1
Location: 2513254..2514534 (1281 bp)
Type: Others
Protein ID: WP_133309606.1
Location: 2515126..2515383 (258 bp)
Type: Others
Protein ID: WP_179952741.1
Location: 2506647..2507552 (906 bp)
Type: Others
Protein ID: WP_133309604.1
Location: 2507613..2507855 (243 bp)
Type: Others
Protein ID: Protein_1885
Location: 2511714..2512316 (603 bp)
Type: Others
Protein ID: WP_133309605.1
Location: 2512198..2512479 (282 bp)
Type: Others
Protein ID: WP_170179598.1
Location: 2514651..2515103 (453 bp)
Type: Others
Protein ID: WP_133309607.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
E2I05_RS096702506647..2507552-906WP_133309604.1ISAs1 family transposase-
E2I05_RS096752507613..2507855-243Protein_1885group II intron reverse transcriptase/maturase-
E2I05_RS096802508397..2510460+2064WP_121855188.1hypothetical protein-
E2I05_RS096852510921..2511190+270WP_121855189.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
E2I05_RS096902511192..2511464+273WP_121855187.1type II toxin-antitoxin system YafQ family toxinToxin
E2I05_RS096952511714..2512316-603WP_133309605.1IS630 family transposase-
E2I05_RS220152512198..2512479-282WP_170179598.1hypothetical protein-
E2I05_RS097002513254..2514534+1281WP_133309606.1group II intron reverse transcriptase/maturase-
E2I05_RS097052514651..2515103-453WP_133309607.1helix-turn-helix domain-containing protein-
E2I05_RS097102515126..2515383+258WP_179952741.1MarR family transcriptional regulator-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(1-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-85)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10320.89 Da        Isoelectric Point: 9.3288

>T120554 WP_121855187.1 NZ_CP037952:2511192-2511464 [Parashewanella spongiae]
MYQLEYSSQFKKDFKKVAKLAIPDVIEVGHVITALQQGQTLAAKYVDHALSGNWANYRDYHVKPDLVLIFKVEDNTLKLA
RIGSHSELFR

Download         Length: 273 bp

>T120554 NZ_CP037952:2511192-2511464 [Parashewanella spongiae]
ATGTATCAACTCGAATACTCGAGCCAATTTAAGAAAGATTTTAAAAAGGTCGCTAAACTTGCAATTCCAGATGTGATTGA
AGTCGGTCATGTCATAACCGCATTGCAGCAAGGGCAAACGCTAGCGGCGAAATATGTAGATCATGCTTTATCAGGTAATT
GGGCTAATTATCGAGACTACCATGTTAAGCCTGATTTAGTTTTGATATTTAAAGTAGAAGATAATACCCTGAAGCTCGCA
AGAATTGGCTCACACAGTGAATTGTTTCGTTAA

Antitoxin


Download         Length: 90 a.a.        Molecular weight: 9823.31 Da        Isoelectric Point: 5.8554

>AT120554 WP_121855189.1 NZ_CP037952:2510921-2511190 [Parashewanella spongiae]
MKTEMLSTRIDQDTKLAFIHICDEVGLSPSQALKLFAKAVINYGGIPFELRSRTPNAKTLEAIKELEDSKGNKADDVKAL
FKELGVNEA

Download         Length: 270 bp

>AT120554 NZ_CP037952:2510921-2511190 [Parashewanella spongiae]
ATGAAGACAGAAATGCTCAGCACTCGTATCGATCAAGATACCAAATTGGCCTTCATTCACATCTGTGATGAGGTAGGGTT
AAGCCCATCACAAGCGCTCAAATTGTTTGCTAAAGCGGTGATCAATTATGGCGGTATCCCGTTTGAACTGCGCTCAAGAA
CACCTAATGCAAAGACACTGGAAGCTATTAAAGAACTTGAAGATAGTAAAGGCAACAAAGCTGATGATGTCAAAGCGTTA
TTTAAAGAGCTCGGAGTGAATGAGGCATAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References