Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) chpSB/PRK09812-ChpS
Location 1374331..1374923 Replicon chromosome
Accession NZ_CP037951
Organism Parashewanella tropica strain MEBiC05444

Toxin (Protein)


Gene name chpB Uniprot ID -
Locus tag E2H97_RS05815 Protein ID WP_133406271.1
Coordinates 1374582..1374923 (+) Length 114 a.a.

Antitoxin (Protein)


Gene name chpS Uniprot ID -
Locus tag E2H97_RS05810 Protein ID WP_133406270.1
Coordinates 1374331..1374582 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E2H97_RS05790 1370605..1371060 - 456 WP_133406266.1 hypothetical protein -
E2H97_RS05795 1371230..1371769 - 540 WP_133406267.1 hypothetical protein -
E2H97_RS05800 1371773..1372258 - 486 WP_133406268.1 hypothetical protein -
E2H97_RS05805 1372689..1373144 - 456 WP_133406269.1 hypothetical protein -
E2H97_RS05810 1374331..1374582 + 252 WP_133406270.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
E2H97_RS05815 1374582..1374923 + 342 WP_133406271.1 type II toxin-antitoxin system ChpB family toxin Toxin
E2H97_RS05820 1376315..1376536 + 222 WP_133406272.1 hypothetical protein -
E2H97_RS05825 1376590..1376820 + 231 WP_133406273.1 type II toxin-antitoxin system RelE/ParE family toxin -
E2H97_RS05830 1377128..1377799 + 672 WP_133406274.1 YjbF family lipoprotein -
E2H97_RS05835 1377804..1378547 + 744 WP_133406275.1 capsule biosynthesis GfcC family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(5-111)

Antitoxin

SpoVT-AbrB domain

(6-50)


Sequences

Toxin        


Download         Length: 114 a.a.        Molecular weight: 12200.31 Da        Isoelectric Point: 7.7942

>T120545 WP_133406271.1 NZ_CP037951:1374582-1374923 [Parashewanella tropica]
MAVFERGDIVRACLNPTVGKELQGDFRPCLVLSPKKYNRLGLTLIAPITQGGNFARFEGFTISLMGTGTETQGVILVNGV
RMVDLQARRAKKIEVAPSEVVDEALAILAAILE

Download         Length: 342 bp

>T120545 NZ_CP037951:1374582-1374923 [Parashewanella tropica]
ATGGCTGTATTTGAGAGAGGGGATATTGTTAGAGCTTGTTTAAACCCAACTGTAGGTAAAGAGCTCCAAGGTGATTTTCG
CCCTTGCTTGGTATTATCACCCAAGAAATACAACCGCTTAGGCTTGACGCTCATTGCGCCTATTACACAAGGTGGTAATT
TTGCTCGTTTTGAAGGTTTTACGATCTCATTAATGGGAACTGGTACTGAGACTCAAGGAGTGATACTGGTTAATGGGGTT
CGTATGGTTGACCTTCAGGCTAGAAGAGCAAAAAAAATAGAAGTTGCACCTTCAGAAGTAGTTGATGAAGCGTTGGCGAT
ATTGGCAGCGATTCTTGAATAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9079.49 Da        Isoelectric Point: 4.8011

>AT120545 WP_133406270.1 NZ_CP037951:1374331-1374582 [Parashewanella tropica]
METTLRTIGNSKGAVIPVQLLKELGLKVGDKLEAITENGRLVITPKKQKKYSLDDLLAKCDDSAPMPQELVDWDGSRAVG
EEI

Download         Length: 252 bp

>AT120545 NZ_CP037951:1374331-1374582 [Parashewanella tropica]
ATGGAAACTACATTAAGAACAATCGGTAACTCAAAAGGTGCGGTTATTCCCGTTCAGCTCTTAAAAGAATTAGGATTAAA
AGTTGGTGATAAGCTTGAAGCGATTACAGAGAATGGTCGTTTAGTGATCACACCTAAAAAGCAAAAGAAATATTCTCTTG
ATGATTTACTCGCTAAATGTGACGACAGTGCACCGATGCCTCAAGAACTTGTTGATTGGGATGGCTCTAGAGCTGTAGGT
GAAGAAATCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References