Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2039212..2039483 | Replicon | chromosome |
| Accession | NZ_CP037903 | ||
| Organism | Escherichia coli strain LHM10-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2039342..2039445 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2039212..2039483 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E1J55_RS09740 | 2035767..2036429 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| E1J55_RS09745 | 2036453..2037109 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| E1J55_RS09750 | 2037211..2037441 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E1J55_RS09755 | 2037580..2037954 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| E1J55_RS09760 | 2037958..2038830 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| E1J55_RS09765 | 2038843..2039184 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2039212..2039483 | - | 272 | - | - | Antitoxin |
| - | 2039342..2039445 | + | 104 | - | - | Toxin |
| E1J55_RS09770 | 2039580..2040237 | + | 658 | Protein_1892 | protein-serine/threonine phosphatase | - |
| E1J55_RS09775 | 2040238..2040429 | - | 192 | WP_001296140.1 | YebW family protein | - |
| E1J55_RS09780 | 2040534..2040770 | - | 237 | WP_136698269.1 | DUF1480 family protein | - |
| E1J55_RS09785 | 2040888..2042327 | - | 1440 | WP_040062830.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T120279 NZ_CP037903:2039342-2039445 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT120279 NZ_CP037903:c2039483-2039212 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
