Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3055040..3055183 | Replicon | chromosome |
| Accession | NZ_CP037864 | ||
| Organism | Citrobacter sp. LY-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3055045..3055148 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3055040..3055183 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E1B03_RS15860 | 3052230..3053618 | + | 1389 | WP_207949468.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E1B03_RS15865 | 3053719..3053955 | + | 237 | WP_165955356.1 | DUF1480 family protein | - |
| E1B03_RS15870 | 3054058..3054249 | + | 192 | WP_103771172.1 | YebW family protein | - |
| E1B03_RS15875 | 3054250..3054891 | - | 642 | WP_133086555.1 | protein-serine/threonine phosphatase | - |
| - | 3055040..3055183 | + | 144 | - | - | Antitoxin |
| - | 3055045..3055148 | - | 104 | - | - | Toxin |
| E1B03_RS15885 | 3055304..3055642 | - | 339 | WP_003833793.1 | YebY family protein | - |
| E1B03_RS15890 | 3055663..3056535 | - | 873 | WP_103771175.1 | copper homeostasis membrane protein CopD | - |
| E1B03_RS15895 | 3056539..3056913 | - | 375 | WP_103771176.1 | CopC domain-containing protein YobA | - |
| E1B03_RS15900 | 3057057..3057287 | + | 231 | WP_103771177.1 | DNA polymerase III subunit theta | - |
| E1B03_RS15905 | 3057394..3058050 | + | 657 | WP_103771178.1 | carbon-nitrogen hydrolase family protein | - |
| E1B03_RS15910 | 3058074..3058736 | + | 663 | WP_103771179.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T120254 NZ_CP037864:c3055148-3055045 [Citrobacter sp. LY-1]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT120254 NZ_CP037864:3055040-3055183 [Citrobacter sp. LY-1]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
