Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1916985..1917256 | Replicon | chromosome |
| Accession | NZ_CP037857 | ||
| Organism | Escherichia coli BW25113 strain AM187 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1917023..1917126 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1916985..1917256 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E1A98_RS09490 | 1914142..1915581 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E1A98_RS09495 | 1915699..1915935 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E1A98_RS09500 | 1916040..1916231 | + | 192 | WP_000457842.1 | YebW family protein | - |
| E1A98_RS09505 | 1916232..1916888 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1916985..1917256 | + | 272 | - | - | Antitoxin |
| - | 1917023..1917126 | - | 104 | - | - | Toxin |
| E1A98_RS09510 | 1917284..1917625 | - | 342 | WP_000976476.1 | YebY family protein | - |
| E1A98_RS09515 | 1917638..1918510 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| E1A98_RS09520 | 1918514..1918888 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| E1A98_RS09525 | 1919027..1919257 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E1A98_RS09530 | 1919359..1920015 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| E1A98_RS09535 | 1920039..1920701 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T120214 NZ_CP037857:c1917126-1917023 [Escherichia coli BW25113]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT120214 NZ_CP037857:1916985-1917256 [Escherichia coli BW25113]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
