Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 554702..555245 Replicon chromosome
Accession NZ_CP037755
Organism Pseudocnuella soli strain 17J28-1

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag EPD17_RS02340 Protein ID WP_132051439.1
Coordinates 554946..555245 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag EPD17_RS02335 Protein ID WP_132051436.1
Coordinates 554702..554953 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EPD17_RS02315 550495..551085 + 591 WP_132051428.1 ATP-binding protein -
EPD17_RS02320 551082..552746 + 1665 WP_132051430.1 glycosyltransferase family 39 protein -
EPD17_RS02325 552796..553512 - 717 WP_132051432.1 monofunctional biosynthetic peptidoglycan transglycosylase -
EPD17_RS02330 553766..554572 + 807 WP_132051434.1 hypothetical protein -
EPD17_RS02335 554702..554953 + 252 WP_132051436.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
EPD17_RS02340 554946..555245 + 300 WP_132051439.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
EPD17_RS02345 555391..556080 - 690 WP_132051441.1 LysE family transporter -
EPD17_RS02350 556209..557762 - 1554 WP_132051443.1 GH3 auxin-responsive promoter family protein -
EPD17_RS02355 557923..559095 - 1173 WP_132051445.1 glycosyltransferase family 2 protein -
EPD17_RS02360 559231..560013 + 783 WP_132051447.1 inositol monophosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-92)

Antitoxin

Antitoxin ParD

(1-79)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11733.55 Da        Isoelectric Point: 5.1718

>T120011 WP_132051439.1 NZ_CP037755:554946-555245 [Pseudocnuella soli]
MPKYFLTQKAVEDLTAIWEYTFETWSERQADKYYAMLAASFEQILEHPEMGKRYPEVDAGLVGLRVGKHIVFYRMMPAND
IEVIRILHQSMDLKSRMEE

Download         Length: 300 bp

>T120011 NZ_CP037755:554946-555245 [Pseudocnuella soli]
ATGCCTAAGTATTTTCTTACCCAAAAAGCCGTTGAAGACCTTACTGCAATTTGGGAATATACCTTCGAAACCTGGTCGGA
GCGGCAAGCGGATAAGTATTACGCAATGCTGGCCGCAAGTTTTGAGCAAATCCTGGAGCATCCGGAGATGGGAAAAAGGT
ACCCAGAGGTTGATGCCGGGTTGGTGGGCCTTCGCGTAGGAAAGCACATTGTATTCTACAGAATGATGCCTGCCAATGAC
ATTGAAGTGATCAGGATTCTGCATCAAAGCATGGACCTAAAAAGCCGGATGGAGGAATAG

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9243.30 Da        Isoelectric Point: 5.6939

>AT120011 WP_132051436.1 NZ_CP037755:554702-554953 [Pseudocnuella soli]
MGRNTSVSLGDYFEDFVENRIAEGRYKNASEVIRAGLRLLEAEENRVAALKHAIIEGINSGIAQDFDADQHLQQLKAAKQ
RNA

Download         Length: 252 bp

>AT120011 NZ_CP037755:554702-554953 [Pseudocnuella soli]
ATGGGACGCAATACATCTGTTTCGCTGGGCGACTATTTCGAAGACTTTGTAGAAAATCGAATTGCCGAGGGCAGGTATAA
AAATGCCAGTGAGGTGATCAGGGCGGGATTACGACTTTTGGAAGCAGAGGAAAACCGGGTTGCTGCTTTGAAGCATGCAA
TTATTGAAGGAATAAACAGCGGCATTGCGCAAGACTTTGATGCAGATCAGCACTTGCAACAATTAAAAGCAGCAAAGCAG
CGGAATGCCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References