Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ataRT/DUF1778(antitoxin)
Location 2311727..2312553 Replicon chromosome
Accession NZ_CP036515
Organism Lichenihabitans psoromatis strain PAMC 29148

Toxin (Protein)


Gene name ataT Uniprot ID -
Locus tag EY713_RS10805 Protein ID WP_131114783.1
Coordinates 2312023..2312553 (+) Length 177 a.a.

Antitoxin (Protein)


Gene name ataR Uniprot ID -
Locus tag EY713_RS10800 Protein ID WP_131119569.1
Coordinates 2311727..2312035 (+) Length 103 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EY713_RS10780 2308077..2308376 - 300 WP_131114780.1 DUF2285 domain-containing protein -
EY713_RS10785 2308584..2308796 + 213 WP_131114781.1 helix-turn-helix transcriptional regulator -
EY713_RS10790 2308788..2309543 - 756 WP_131114782.1 LysR family transcriptional regulator -
EY713_RS10795 2309608..2310788 + 1181 WP_131113083.1 IS3 family transposase -
EY713_RS10800 2311727..2312035 + 309 WP_131119569.1 DUF1778 domain-containing protein Antitoxin
EY713_RS10805 2312023..2312553 + 531 WP_131114783.1 GNAT family N-acetyltransferase Toxin
EY713_RS10810 2312571..2313536 + 966 WP_131114784.1 hypothetical protein -
EY713_RS10815 2313779..2314195 - 417 WP_131114785.1 hypothetical protein -
EY713_RS10820 2314342..2316387 - 2046 WP_131114786.1 ParB/RepB/Spo0J family partition protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Vibrio phage ICP1, Orf50

(15-101)


Sequences

Toxin        


Download         Length: 177 a.a.        Molecular weight: 18959.65 Da        Isoelectric Point: 7.6676

>T119926 WP_131114783.1 NZ_CP036515:2312023-2312553 [Lichenihabitans psoromatis]
MGNVTPDPERPQTKLSAPVPLTTNHDLTDFDCGEPVLNDWLKHRALKNESRFSRTYVVCDGNAVVAYFCIAAGSVERAAA
PGKVRRNAPDVIPVSVIGRLAVSRTYAGRGLGADILSDALRRIAVASQSIGIGAVLVQAKDDSAKRFYMACAEFTEYPAD
SRTLFMPIETVIAAFS

Download         Length: 531 bp

>T119926 NZ_CP036515:2312023-2312553 [Lichenihabitans psoromatis]
ATGGGAAACGTAACGCCTGATCCCGAGCGTCCGCAAACGAAGCTCTCAGCCCCGGTTCCTTTAACGACGAACCATGACCT
GACGGACTTTGATTGCGGCGAGCCGGTCCTGAACGACTGGCTGAAGCATCGGGCGCTGAAGAACGAAAGCCGGTTCTCCC
GCACCTATGTCGTCTGTGACGGCAATGCGGTGGTCGCCTATTTCTGTATCGCCGCCGGATCGGTGGAACGGGCGGCCGCA
CCGGGCAAGGTCCGGCGCAATGCGCCTGACGTCATTCCCGTTTCGGTGATCGGGCGTCTGGCGGTGAGCCGCACCTATGC
CGGTCGCGGCCTTGGCGCGGACATCCTGTCGGACGCCCTGCGCCGTATTGCCGTCGCGTCCCAGAGCATCGGGATTGGGG
CGGTACTGGTGCAGGCCAAGGATGACAGTGCGAAGCGCTTCTACATGGCCTGTGCCGAATTCACCGAATATCCGGCGGAT
AGCCGAACGCTGTTTATGCCCATTGAAACCGTGATCGCGGCCTTTAGCTAG

Antitoxin


Download         Length: 103 a.a.        Molecular weight: 11406.18 Da        Isoelectric Point: 8.7277

>AT119926 WP_131119569.1 NZ_CP036515:2311727-2312035 [Lichenihabitans psoromatis]
MRPATVAVAERPLSAETKGSINLRIESHTRRLIDDAAAILGKTRTEFMIDSARSLAIDVLLDQRLFVLDSERYDAFIHAL
DNPLAPGPKLRALLRRVPAWET

Download         Length: 309 bp

>AT119926 NZ_CP036515:2311727-2312035 [Lichenihabitans psoromatis]
ATGCGTCCTGCGACCGTAGCGGTTGCGGAGCGTCCTTTGTCGGCCGAAACCAAGGGCAGCATCAATCTGCGCATCGAGTC
GCATACGCGCCGGCTCATCGACGATGCGGCGGCCATCCTGGGCAAGACGCGCACCGAGTTCATGATCGATAGCGCTCGCT
CGCTGGCGATCGACGTGCTGCTGGATCAGCGCCTGTTCGTGCTCGACTCCGAGCGGTACGACGCCTTCATCCACGCGCTC
GACAATCCCCTAGCACCCGGACCCAAGCTGCGCGCGCTGTTGCGTCGAGTTCCGGCATGGGAAACGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References