Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2372665..2372782 Replicon chromosome
Accession NZ_CP036514
Organism Hafnia alvei strain PCM_1220

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2372678..2372781 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2372665..2372782 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EYZ02_RS11205 2367825..2368316 - 492 WP_046457045.1 GAF domain-containing protein -
EYZ02_RS11210 2368547..2369791 + 1245 WP_046449284.1 membrane integrity lipid transport subunit YebS -
EYZ02_RS11215 2369760..2372390 + 2631 WP_043493389.1 PqiB family protein -
- 2372665..2372782 - 118 - - Antitoxin
- 2372678..2372781 + 104 - - Toxin
EYZ02_RS11220 2372893..2373234 - 342 WP_130994600.1 DHCW motif cupin fold protein -
EYZ02_RS11225 2373988..2375151 + 1164 WP_038502234.1 porin -
EYZ02_RS11230 2375225..2375692 - 468 WP_046449283.1 hypothetical protein -
EYZ02_RS11235 2375846..2376283 - 438 WP_046449282.1 peptidoglycan-binding protein LysM -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T119914 NZ_CP036514:2372678-2372781 [Hafnia alvei]
GCAAGGCAATCCAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTACCCTAGACCTGATAC
AGGAATCGTATCAGGTCTCTTTTT

Antitoxin


Download         Length: 118 bp

>AT119914 NZ_CP036514:c2372782-2372665 [Hafnia alvei]
TAAAAAGAGACCTGATACGATTCCTGTATCAGGTCTAGGGTAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTGGATTGCCTTGCTATTTAAGAGTAG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References