Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/LOTUS_5_Limkain_b1(toxin) |
| Location | 3233994..3234568 | Replicon | chromosome |
| Accession | NZ_CP036498 | ||
| Organism | Rhodopseudomonas sp. SK50-23 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | RPMA_RS15335 | Protein ID | WP_211908315.1 |
| Coordinates | 3233994..3234359 (-) | Length | 122 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | - |
| Locus tag | RPMA_RS15340 | Protein ID | WP_211908317.1 |
| Coordinates | 3234353..3234568 (-) | Length | 72 a.a. |
Genomic Context
Location: 3234840..3236168 (1329 bp)
Type: Others
Protein ID: WP_211908319.1
Type: Others
Protein ID: WP_211908319.1
Location: 3232136..3233320 (1185 bp)
Type: Others
Protein ID: WP_211908311.1
Type: Others
Protein ID: WP_211908311.1
Location: 3233317..3233904 (588 bp)
Type: Others
Protein ID: WP_211908313.1
Type: Others
Protein ID: WP_211908313.1
Location: 3233994..3234359 (366 bp)
Type: Toxin
Protein ID: WP_211908315.1
Type: Toxin
Protein ID: WP_211908315.1
Location: 3234353..3234568 (216 bp)
Type: Antitoxin
Protein ID: WP_211908317.1
Type: Antitoxin
Protein ID: WP_211908317.1
Location: 3236350..3237324 (975 bp)
Type: Others
Protein ID: WP_211908322.1
Type: Others
Protein ID: WP_211908322.1
Location: 3237390..3238112 (723 bp)
Type: Others
Protein ID: WP_211908324.1
Type: Others
Protein ID: WP_211908324.1
Location: 3238109..3238843 (735 bp)
Type: Others
Protein ID: WP_211908326.1
Type: Others
Protein ID: WP_211908326.1
Loading, please wait
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RPMA_RS15325 (RPMA_15180) | 3232136..3233320 | - | 1185 | WP_211908311.1 | CmpA/NrtA family ABC transporter substrate-binding protein | - |
| RPMA_RS15330 (RPMA_15185) | 3233317..3233904 | - | 588 | WP_211908313.1 | ANTAR domain-containing protein | - |
| RPMA_RS15335 (RPMA_15190) | 3233994..3234359 | - | 366 | WP_211908315.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| RPMA_RS15340 (RPMA_15195) | 3234353..3234568 | - | 216 | WP_211908317.1 | ribbon-helix-helix protein, CopG family | Antitoxin |
| RPMA_RS15345 (RPMA_15200) | 3234840..3236168 | + | 1329 | WP_211908319.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| RPMA_RS15350 (RPMA_15205) | 3236350..3237324 | - | 975 | WP_211908322.1 | quinone oxidoreductase | - |
| RPMA_RS15355 (RPMA_15210) | 3237390..3238112 | - | 723 | WP_211908324.1 | TerC family protein | - |
| RPMA_RS15360 (RPMA_15215) | 3238109..3238843 | - | 735 | WP_211908326.1 | phosphatidylcholine synthase | - |
Associated MGEs
Loading, please wait
MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 122 a.a. Molecular weight: 13594.72 Da Isoelectric Point: 7.2052
>T119892 WP_211908315.1 NZ_CP036498:c3234359-3233994 [Rhodopseudomonas sp. SK50-23]
MVGALFDTNILIDHLNAVPQAREEIARFENRAISIITWMEVMVGAKRDLVEQTRRFLGGFEVIALDNAIADRAVTLRQTH
RIKLPDAVIWATAQTAARLLVTRNTKDFPPDDPGIRTPYAL
MVGALFDTNILIDHLNAVPQAREEIARFENRAISIITWMEVMVGAKRDLVEQTRRFLGGFEVIALDNAIADRAVTLRQTH
RIKLPDAVIWATAQTAARLLVTRNTKDFPPDDPGIRTPYAL
Download Length: 366 bp
>T119892 NZ_CP036498:c3234359-3233994 [Rhodopseudomonas sp. SK50-23]
ATGGTAGGCGCGCTATTCGACACCAACATCCTCATCGACCATCTGAACGCCGTGCCCCAGGCCCGCGAAGAGATCGCGCG
TTTCGAAAATCGCGCCATCAGCATCATTACCTGGATGGAGGTGATGGTGGGCGCGAAACGCGATCTGGTCGAGCAGACCC
GCCGCTTTCTCGGCGGCTTCGAAGTCATCGCCCTGGACAACGCGATTGCCGATCGTGCAGTGACGTTGCGGCAGACGCAT
CGCATCAAGCTGCCCGATGCGGTGATCTGGGCAACGGCGCAGACCGCCGCACGTCTGCTGGTGACCCGCAATACGAAGGA
CTTTCCGCCCGACGATCCCGGAATTCGCACGCCCTATGCTTTATAG
ATGGTAGGCGCGCTATTCGACACCAACATCCTCATCGACCATCTGAACGCCGTGCCCCAGGCCCGCGAAGAGATCGCGCG
TTTCGAAAATCGCGCCATCAGCATCATTACCTGGATGGAGGTGATGGTGGGCGCGAAACGCGATCTGGTCGAGCAGACCC
GCCGCTTTCTCGGCGGCTTCGAAGTCATCGCCCTGGACAACGCGATTGCCGATCGTGCAGTGACGTTGCGGCAGACGCAT
CGCATCAAGCTGCCCGATGCGGTGATCTGGGCAACGGCGCAGACCGCCGCACGTCTGCTGGTGACCCGCAATACGAAGGA
CTTTCCGCCCGACGATCCCGGAATTCGCACGCCCTATGCTTTATAG
Antitoxin
Download Length: 72 a.a. Molecular weight: 8124.22 Da Isoelectric Point: 9.7761
>AT119892 WP_211908317.1 NZ_CP036498:c3234568-3234353 [Rhodopseudomonas sp. SK50-23]
MRALIDMSDAQVKALDALAKRGRQSRAALIRAAIDDYLQRHHRAQVEDGFGLWGKREVDGLAYQDKVRSEW
MRALIDMSDAQVKALDALAKRGRQSRAALIRAAIDDYLQRHHRAQVEDGFGLWGKREVDGLAYQDKVRSEW
Download Length: 216 bp
>AT119892 NZ_CP036498:c3234568-3234353 [Rhodopseudomonas sp. SK50-23]
ATGCGTGCTTTGATCGATATGAGCGACGCCCAGGTGAAAGCCTTGGACGCGCTGGCGAAACGAGGGAGGCAGTCTCGTGC
TGCGCTGATCCGGGCGGCGATCGACGACTATCTCCAACGCCATCATCGCGCCCAGGTGGAGGACGGTTTCGGCCTGTGGG
GCAAACGTGAGGTCGATGGTCTGGCCTATCAGGACAAGGTGCGCAGCGAATGGTAG
ATGCGTGCTTTGATCGATATGAGCGACGCCCAGGTGAAAGCCTTGGACGCGCTGGCGAAACGAGGGAGGCAGTCTCGTGC
TGCGCTGATCCGGGCGGCGATCGACGACTATCTCCAACGCCATCATCGCGCCCAGGTGGAGGACGGTTTCGGCCTGTGGG
GCAAACGTGAGGTCGATGGTCTGGCCTATCAGGACAAGGTGCGCAGCGAATGGTAG