Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/upstrm_HI1419-dnstrm_HI1420 |
| Location | 2505055..2505652 | Replicon | chromosome |
| Accession | NZ_CP036498 | ||
| Organism | Rhodopseudomonas sp. SK50-23 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | RPMA_RS11680 | Protein ID | WP_211912957.1 |
| Coordinates | 2505055..2505351 (+) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | RPMA_RS11685 | Protein ID | WP_211912958.1 |
| Coordinates | 2505356..2505652 (+) | Length | 99 a.a. |
Genomic Context
Location: 2502693..2503628 (936 bp)
Type: Others
Protein ID: WP_211912954.1
Type: Others
Protein ID: WP_211912954.1
Location: 2503631..2504104 (474 bp)
Type: Others
Protein ID: WP_211912955.1
Type: Others
Protein ID: WP_211912955.1
Location: 2504119..2504904 (786 bp)
Type: Others
Protein ID: WP_211912956.1
Type: Others
Protein ID: WP_211912956.1
Location: 2505055..2505351 (297 bp)
Type: Toxin
Protein ID: WP_211912957.1
Type: Toxin
Protein ID: WP_211912957.1
Location: 2505356..2505652 (297 bp)
Type: Antitoxin
Protein ID: WP_211912958.1
Type: Antitoxin
Protein ID: WP_211912958.1
Location: 2509553..2510619 (1067 bp)
Type: Others
Protein ID: Protein_2308
Type: Others
Protein ID: Protein_2308
Location: 2500790..2501944 (1155 bp)
Type: Others
Protein ID: WP_211912953.1
Type: Others
Protein ID: WP_211912953.1
Location: 2505704..2506450 (747 bp)
Type: Others
Protein ID: WP_211912959.1
Type: Others
Protein ID: WP_211912959.1
Location: 2506614..2507348 (735 bp)
Type: Others
Protein ID: WP_211912960.1
Type: Others
Protein ID: WP_211912960.1
Location: 2507492..2509321 (1830 bp)
Type: Others
Protein ID: WP_211912961.1
Type: Others
Protein ID: WP_211912961.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RPMA_RS11660 (RPMA_11605) | 2500790..2501944 | - | 1155 | WP_211912953.1 | efflux RND transporter periplasmic adaptor subunit | - |
| RPMA_RS11665 (RPMA_11610) | 2502693..2503628 | + | 936 | WP_211912954.1 | tonB-system energizer ExbB | - |
| RPMA_RS11670 (RPMA_11615) | 2503631..2504104 | + | 474 | WP_211912955.1 | TonB system transport protein ExbD | - |
| RPMA_RS11675 (RPMA_11620) | 2504119..2504904 | + | 786 | WP_211912956.1 | TonB family protein | - |
| RPMA_RS11680 (RPMA_11625) | 2505055..2505351 | + | 297 | WP_211912957.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| RPMA_RS11685 (RPMA_11630) | 2505356..2505652 | + | 297 | WP_211912958.1 | putative addiction module antidote protein | Antitoxin |
| RPMA_RS11690 (RPMA_11635) | 2505704..2506450 | - | 747 | WP_211912959.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| RPMA_RS11695 (RPMA_11640) | 2506614..2507348 | - | 735 | WP_211912960.1 | SDR family oxidoreductase | - |
| RPMA_RS11700 (RPMA_11645) | 2507492..2509321 | - | 1830 | WP_211912961.1 | IlvD/Edd family dehydratase | - |
| RPMA_RS11705 (RPMA_11650) | 2509553..2510619 | + | 1067 | Protein_2308 | sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 10882.54 Da Isoelectric Point: 10.3379
>T119889 WP_211912957.1 NZ_CP036498:2505055-2505351 [Rhodopseudomonas sp. SK50-23]
VIEVRETPEFTRWLAALKDQRAVLHVVRRIARVAAGNFGDVKSVGGVVSELRIDYGPGYRVYFTRRGAVIVVLLCGGDKR
TQSRDIKRAAEIAGQLED
VIEVRETPEFTRWLAALKDQRAVLHVVRRIARVAAGNFGDVKSVGGVVSELRIDYGPGYRVYFTRRGAVIVVLLCGGDKR
TQSRDIKRAAEIAGQLED
Download Length: 297 bp
>T119889 NZ_CP036498:2505055-2505351 [Rhodopseudomonas sp. SK50-23]
GTGATCGAGGTTCGCGAAACACCTGAGTTCACCCGGTGGCTGGCCGCTTTGAAAGATCAGCGCGCCGTCCTTCATGTCGT
TCGCCGGATCGCTCGTGTCGCTGCAGGCAATTTCGGAGACGTGAAGTCAGTGGGTGGTGTCGTGTCCGAGCTGCGGATCG
ACTACGGCCCCGGATATCGCGTCTACTTTACGCGACGCGGCGCGGTGATCGTCGTTCTGCTTTGTGGCGGCGACAAGCGC
ACGCAGAGTCGGGATATCAAACGCGCAGCCGAGATCGCCGGTCAGTTGGAGGATTGA
GTGATCGAGGTTCGCGAAACACCTGAGTTCACCCGGTGGCTGGCCGCTTTGAAAGATCAGCGCGCCGTCCTTCATGTCGT
TCGCCGGATCGCTCGTGTCGCTGCAGGCAATTTCGGAGACGTGAAGTCAGTGGGTGGTGTCGTGTCCGAGCTGCGGATCG
ACTACGGCCCCGGATATCGCGTCTACTTTACGCGACGCGGCGCGGTGATCGTCGTTCTGCTTTGTGGCGGCGACAAGCGC
ACGCAGAGTCGGGATATCAAACGCGCAGCCGAGATCGCCGGTCAGTTGGAGGATTGA
Antitoxin
Download Length: 99 a.a. Molecular weight: 10347.88 Da Isoelectric Point: 7.2030
>AT119889 WP_211912958.1 NZ_CP036498:2505356-2505652 [Rhodopseudomonas sp. SK50-23]
MKTGKLKKFDAAEHLTTPEARAEYLSIVLADGDPAEVRDALNIVARAQGMSEVARAAGVTREGLYKTLGETGNPEFATIL
KVIGALGIRLSAHAVDAK
MKTGKLKKFDAAEHLTTPEARAEYLSIVLADGDPAEVRDALNIVARAQGMSEVARAAGVTREGLYKTLGETGNPEFATIL
KVIGALGIRLSAHAVDAK
Download Length: 297 bp
>AT119889 NZ_CP036498:2505356-2505652 [Rhodopseudomonas sp. SK50-23]
ATGAAAACCGGCAAGCTGAAAAAGTTCGACGCCGCCGAGCATTTGACGACGCCGGAGGCGCGCGCCGAATATCTGAGCAT
CGTTCTGGCCGATGGCGATCCTGCCGAAGTCCGCGATGCTCTCAACATCGTTGCCCGTGCACAGGGCATGAGTGAGGTCG
CGCGTGCCGCTGGTGTGACCCGAGAAGGGCTTTACAAGACGCTCGGGGAGACTGGCAATCCGGAGTTCGCGACGATCCTG
AAAGTCATCGGCGCGTTAGGAATCCGCCTTTCAGCGCACGCGGTCGACGCAAAGTAG
ATGAAAACCGGCAAGCTGAAAAAGTTCGACGCCGCCGAGCATTTGACGACGCCGGAGGCGCGCGCCGAATATCTGAGCAT
CGTTCTGGCCGATGGCGATCCTGCCGAAGTCCGCGATGCTCTCAACATCGTTGCCCGTGCACAGGGCATGAGTGAGGTCG
CGCGTGCCGCTGGTGTGACCCGAGAAGGGCTTTACAAGACGCTCGGGGAGACTGGCAATCCGGAGTTCGCGACGATCCTG
AAAGTCATCGGCGCGTTAGGAATCCGCCTTTCAGCGCACGCGGTCGACGCAAAGTAG