Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3416992..3417137 | Replicon | chromosome |
| Accession | NZ_CP036442 | ||
| Organism | Klebsiella pneumoniae strain ABFPV | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3416999..3417101 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3416992..3417137 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WN05_RS16915 | 3412524..3413957 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| WN05_RS16920 | 3414073..3414312 | + | 240 | WP_002911393.1 | YebV family protein | - |
| WN05_RS16925 | 3414410..3414601 | + | 192 | WP_002911395.1 | YebW family protein | - |
| WN05_RS16930 | 3414598..3415251 | - | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| WN05_RS16935 | 3415408..3416376 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| WN05_RS28865 | 3416481..3416624 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3416992..3417137 | + | 146 | - | - | Antitoxin |
| - | 3416999..3417101 | - | 103 | - | - | Toxin |
| WN05_RS16945 | 3417260..3417598 | - | 339 | WP_002911404.1 | YebY family protein | - |
| WN05_RS16950 | 3417615..3418484 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| WN05_RS16955 | 3418488..3418862 | - | 375 | WP_020316569.1 | CopC domain-containing protein YobA | - |
| WN05_RS16960 | 3418975..3419205 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| WN05_RS16965 | 3419284..3419943 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| WN05_RS16970 | 3419947..3422007 | - | 2061 | WP_032419805.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T119809 NZ_CP036442:c3417101-3416999 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT119809 NZ_CP036442:3416992-3417137 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
