Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 116013..116158 | Replicon | chromosome |
| Accession | NZ_CP036438 | ||
| Organism | Klebsiella pneumoniae strain ABFQB | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 116020..116122 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 116013..116158 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WN11_RS00535 | 111545..112978 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| WN11_RS00540 | 113094..113333 | + | 240 | WP_002911393.1 | YebV family protein | - |
| WN11_RS00545 | 113431..113622 | + | 192 | WP_002911395.1 | YebW family protein | - |
| WN11_RS00550 | 113619..114272 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| WN11_RS00555 | 114429..115397 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| WN11_RS27220 | 115502..115645 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 116013..116158 | + | 146 | - | - | Antitoxin |
| - | 116020..116122 | - | 103 | - | - | Toxin |
| WN11_RS00565 | 116281..116619 | - | 339 | WP_002911404.1 | YebY family protein | - |
| WN11_RS00570 | 116636..117505 | - | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| WN11_RS00575 | 117509..117883 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| WN11_RS00580 | 117996..118226 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| WN11_RS00585 | 118305..118964 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| WN11_RS00590 | 118968..121028 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T119780 NZ_CP036438:c116122-116020 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT119780 NZ_CP036438:116013-116158 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
