Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3520589..3520732 | Replicon | chromosome |
| Accession | NZ_CP036435 | ||
| Organism | Citrobacter sp. ABFQG | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3520594..3520697 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3520589..3520732 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WN16_RS17280 | 3517779..3519167 | + | 1389 | WP_044700319.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| WN16_RS17285 | 3519268..3519504 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| WN16_RS17290 | 3519607..3519798 | + | 192 | WP_003034941.1 | YebW family protein | - |
| WN16_RS17295 | 3519799..3520440 | - | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| - | 3520589..3520732 | + | 144 | - | - | Antitoxin |
| - | 3520594..3520697 | - | 104 | - | - | Toxin |
| WN16_RS17300 | 3520853..3521191 | - | 339 | WP_044700293.1 | YebY family protein | - |
| WN16_RS17305 | 3521212..3522084 | - | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| WN16_RS17310 | 3522088..3522462 | - | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| WN16_RS17315 | 3522606..3522836 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| WN16_RS17320 | 3522943..3523599 | + | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| WN16_RS17325 | 3523623..3524285 | + | 663 | WP_003034918.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T119771 NZ_CP036435:c3520697-3520594 [Citrobacter sp. ABFQG]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT119771 NZ_CP036435:3520589-3520732 [Citrobacter sp. ABFQG]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
