Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3029976..3030121 | Replicon | chromosome |
| Accession | NZ_CP036371 | ||
| Organism | Klebsiella pneumoniae strain WCHKP020037 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3029983..3030085 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3029976..3030121 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEA76_RS15390 | 3025508..3026941 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CEA76_RS15395 | 3027057..3027296 | + | 240 | WP_002911393.1 | YebV family protein | - |
| CEA76_RS15400 | 3027394..3027585 | + | 192 | WP_002911395.1 | YebW family protein | - |
| CEA76_RS15405 | 3027582..3028235 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| CEA76_RS15410 | 3028392..3029360 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CEA76_RS30370 | 3029465..3029608 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3029976..3030121 | + | 146 | - | - | Antitoxin |
| - | 3029983..3030085 | - | 103 | - | - | Toxin |
| CEA76_RS15420 | 3030244..3030582 | - | 339 | WP_002911404.1 | YebY family protein | - |
| CEA76_RS15425 | 3030599..3031468 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| CEA76_RS15430 | 3031472..3031846 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CEA76_RS15435 | 3031959..3032189 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CEA76_RS15440 | 3032268..3032927 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CEA76_RS15445 | 3032931..3034991 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T119667 NZ_CP036371:c3030085-3029983 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT119667 NZ_CP036371:3029976-3030121 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
