Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4252409..4252554 | Replicon | chromosome |
| Accession | NZ_CP036365 | ||
| Organism | Klebsiella pneumoniae strain WCHKP115068 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4252416..4252518 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4252409..4252554 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DVJ72_RS21495 | 4247941..4249374 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DVJ72_RS21500 | 4249490..4249729 | + | 240 | WP_002911393.1 | YebV family protein | - |
| DVJ72_RS21505 | 4249827..4250018 | + | 192 | WP_002911395.1 | YebW family protein | - |
| DVJ72_RS21510 | 4250015..4250668 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| DVJ72_RS21515 | 4250825..4251793 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| DVJ72_RS29850 | 4251898..4252041 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4252409..4252554 | + | 146 | - | - | Antitoxin |
| - | 4252416..4252518 | - | 103 | - | - | Toxin |
| DVJ72_RS21525 | 4252677..4253015 | - | 339 | WP_002911404.1 | YebY family protein | - |
| DVJ72_RS21530 | 4253032..4253901 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| DVJ72_RS21535 | 4253905..4254279 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| DVJ72_RS21540 | 4254392..4254622 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DVJ72_RS21545 | 4254701..4255360 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| DVJ72_RS21550 | 4255364..4257424 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T119649 NZ_CP036365:c4252518-4252416 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT119649 NZ_CP036365:4252409-4252554 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
