Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 606946..607091 | Replicon | chromosome |
| Accession | NZ_CP036335 | ||
| Organism | Klebsiella pneumoniae strain BP327 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 606982..607084 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 606946..607091 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EYB55_RS02950 | 602076..604136 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| EYB55_RS02955 | 604140..604799 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| EYB55_RS02960 | 604878..605108 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EYB55_RS02965 | 605221..605595 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| EYB55_RS02970 | 605599..606468 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| EYB55_RS02975 | 606485..606823 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 606946..607091 | - | 146 | - | - | Antitoxin |
| - | 606982..607084 | + | 103 | - | - | Toxin |
| EYB55_RS29655 | 607460..607603 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| EYB55_RS02985 | 607708..608676 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| EYB55_RS02990 | 608833..609486 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| EYB55_RS02995 | 609483..609674 | - | 192 | WP_002911395.1 | YebW family protein | - |
| EYB55_RS03000 | 609772..610011 | - | 240 | WP_002911393.1 | YebV family protein | - |
| EYB55_RS03005 | 610127..611560 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T119586 NZ_CP036335:606982-607084 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT119586 NZ_CP036335:c607091-606946 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
