Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 885554..886173 Replicon chromosome
Accession NZ_CP036320
Organism Klebsiella pneumoniae strain VBA2172

Toxin (Protein)


Gene name Hha Uniprot ID R8WYV2
Locus tag CK244_RS04420 Protein ID WP_002892050.1
Coordinates 885955..886173 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID J2DPF6
Locus tag CK244_RS04415 Protein ID WP_002892066.1
Coordinates 885554..885928 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CK244_RS04405 880706..881899 + 1194 WP_004177236.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
CK244_RS04410 881922..885068 + 3147 WP_002892069.1 multidrug efflux RND transporter permease subunit AcrB -
CK244_RS04415 885554..885928 + 375 WP_002892066.1 Hha toxicity modulator TomB Antitoxin
CK244_RS04420 885955..886173 + 219 WP_002892050.1 hemolysin expression modulator Hha Toxin
CK244_RS04425 886336..886902 + 567 WP_002892030.1 maltose O-acetyltransferase -
CK244_RS28455 886874..887014 - 141 WP_004147370.1 hypothetical protein -
CK244_RS04430 887035..887505 + 471 WP_002892026.1 YlaC family protein -
CK244_RS04435 887480..888931 - 1452 WP_064162152.1 PLP-dependent aminotransferase family protein -
CK244_RS04440 889032..889730 + 699 WP_004177238.1 GNAT family N-acetyltransferase -
CK244_RS04445 889727..889867 - 141 WP_002892018.1 type B 50S ribosomal protein L36 -
CK244_RS04450 889867..890130 - 264 WP_002892011.1 type B 50S ribosomal protein L31 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-116)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T119552 WP_002892050.1 NZ_CP036320:885955-886173 [Klebsiella pneumoniae]
MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPTSVWKFIR

Download         Length: 219 bp

>T119552 NZ_CP036320:885955-886173 [Klebsiella pneumoniae]
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACCTCTGTCTGGAAATTTATCCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14368.06 Da        Isoelectric Point: 4.8989

>AT119552 WP_002892066.1 NZ_CP036320:885554-885928 [Klebsiella pneumoniae]
MDEYSPKRHDIAQLRFLCETLYHDCLANLEESNHGWVNDPTSAVNLQLNELIEHIATFALNYKIKYAEDNKLIAQVDEYL
DDTFTLFSNYGINSTDLQKWKKSGNRLFRCFVNASRENPASLSC

Download         Length: 375 bp

>AT119552 NZ_CP036320:885554-885928 [Klebsiella pneumoniae]
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2P8K6F2

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GJ93

References