Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1847167..1847366 | Replicon | chromosome |
| Accession | NZ_CP036310 | ||
| Organism | Enterobacter hormaechei strain WCHEH090011 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1847260..1847363 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1847167..1847366 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKN58_RS09075 | 1843704..1844366 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| EKN58_RS09080 | 1844391..1845041 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| EKN58_RS09085 | 1845153..1845383 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| EKN58_RS09090 | 1845521..1845892 | + | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| EKN58_RS09095 | 1845894..1846763 | + | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| EKN58_RS09100 | 1846780..1847118 | + | 339 | WP_032609509.1 | YebY family protein | - |
| - | 1847167..1847366 | - | 200 | - | - | Antitoxin |
| EKN58_RS09105 | 1847244..1847441 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 1847260..1847363 | + | 104 | - | - | Toxin |
| EKN58_RS09110 | 1847487..1848467 | - | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| EKN58_RS09115 | 1848635..1849279 | + | 645 | WP_126295006.1 | protein-serine/threonine phosphatase | - |
| EKN58_RS09120 | 1849314..1849553 | - | 240 | WP_003859885.1 | YebV family protein | - |
| EKN58_RS09125 | 1849660..1851108 | - | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T119541 NZ_CP036310:1847260-1847363 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT119541 NZ_CP036310:c1847366-1847167 [Enterobacter hormaechei]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
