Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2025049..2025194 Replicon chromosome
Accession NZ_CP036305
Organism Klebsiella pneumoniae strain WCHKP020098

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2025085..2025187 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2025049..2025194 (-)

Genomic Context

C6M05_RS10145C6M05_RS10160C6M05_RS10165C6M05_RS10170--C6M05_RS10185C6M05_RS10150C6M05_RS10155--C6M05_RS30360C6M05_RS10180C6M05_RS10190C6M05_RS10195C6M05_RS10200
Location: 2020179..2022239 (2061 bp)
Type: Others
Protein ID: WP_004151449.1
Location: 2023324..2023698 (375 bp)
Type: Others
Protein ID: WP_004151448.1
Location: 2023702..2024571 (870 bp)
Type: Others
Protein ID: WP_062955019.1
Location: 2024588..2024926 (339 bp)
Type: Others
Protein ID: WP_002911404.1
Location: 2025085..2025187 (103 bp)
Type: Toxin
Protein ID: -
Location: 2026935..2027588 (654 bp)
Type: Others
Protein ID: WP_004180432.1
Location: 2022243..2022902 (660 bp)
Type: Others
Protein ID: WP_002911407.1
Location: 2022981..2023211 (231 bp)
Type: Others
Protein ID: WP_002911406.1
Location: 2025049..2025194 (146 bp)
Type: Antitoxin
Protein ID: -
Location: 2025562..2025705 (144 bp)
Type: Others
Protein ID: WP_002911398.1
Location: 2025810..2026778 (969 bp)
Type: Others
Protein ID: WP_004151446.1
Location: 2027585..2027776 (192 bp)
Type: Others
Protein ID: WP_002911395.1
Location: 2027874..2028113 (240 bp)
Type: Others
Protein ID: WP_002911393.1
Location: 2028229..2029662 (1434 bp)
Type: Others
Protein ID: WP_004148845.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
C6M05_RS101452020179..2022239+2061WP_004151449.1oligopeptidase B-
C6M05_RS101502022243..2022902-660WP_002911407.1exodeoxyribonuclease X-
C6M05_RS101552022981..2023211-231WP_002911406.1DNA polymerase III subunit theta-
C6M05_RS101602023324..2023698+375WP_004151448.1CopC domain-containing protein YobA-
C6M05_RS101652023702..2024571+870WP_062955019.1copper homeostasis membrane protein CopD-
C6M05_RS101702024588..2024926+339WP_002911404.1YebY family protein-
-2025049..2025194-146--Antitoxin
-2025085..2025187+103--Toxin
C6M05_RS303602025562..2025705-144WP_002911398.1Ecr family regulatory small membrane protein-
C6M05_RS101802025810..2026778-969WP_004151446.1VirK/YbjX family protein-
C6M05_RS101852026935..2027588+654WP_004180432.1protein-serine/threonine phosphatase-
C6M05_RS101902027585..2027776-192WP_002911395.1YebW family protein-
C6M05_RS101952027874..2028113-240WP_002911393.1YebV family protein-
C6M05_RS102002028229..2029662-1434WP_004148845.116S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T119510 NZ_CP036305:2025085-2025187 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT119510 NZ_CP036305:c2025194-2025049 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References