Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | EcnAB/- |
| Location | 4684436..4684797 | Replicon | chromosome |
| Accession | NZ_CP036255 | ||
| Organism | Xanthomonas oryzae strain BB151-3 | ||
Toxin (Protein)
| Gene name | EcnB | Uniprot ID | G7TLC7 |
| Locus tag | EYC56_RS22110 | Protein ID | WP_011257368.1 |
| Coordinates | 4684436..4684570 (-) | Length | 45 a.a. |
Antitoxin (Protein)
| Gene name | EcnA | Uniprot ID | G7TLC8 |
| Locus tag | EYC56_RS22115 | Protein ID | WP_011407410.1 |
| Coordinates | 4684645..4684797 (-) | Length | 51 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EYC56_RS22095 | 4681452..4682474 | - | 1023 | WP_165480808.1 | MBL fold metallo-hydrolase | - |
| EYC56_RS22100 | 4682527..4683816 | - | 1290 | WP_131085594.1 | tryptophan--tRNA ligase | - |
| EYC56_RS22105 | 4683985..4684194 | - | 210 | WP_053503274.1 | CsbD family protein | - |
| EYC56_RS22110 | 4684436..4684570 | - | 135 | WP_011257368.1 | entericidin A/B family lipoprotein | Toxin |
| EYC56_RS22115 | 4684645..4684797 | - | 153 | WP_011407410.1 | entericidin A/B family lipoprotein | Antitoxin |
| EYC56_RS22120 | 4684905..4685828 | - | 924 | WP_053503273.1 | arginase | - |
| EYC56_RS22125 | 4686150..4686814 | + | 665 | Protein_4007 | hypothetical protein | - |
| EYC56_RS22130 | 4686811..4687353 | + | 543 | WP_131085596.1 | GTPase | - |
| EYC56_RS22140 | 4687832..4688515 | + | 684 | WP_053503272.1 | dTMP kinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | - | 4553869..4689283 | 135414 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 45 a.a. Molecular weight: 4457.33 Da Isoelectric Point: 10.2040
>T119456 WP_011257368.1 NZ_CP036255:c4684570-4684436 [Xanthomonas oryzae]
MKRAIVLLVLSMLSVGLLSGCNTVAGAGKDVKGAGEKVEDAARK
MKRAIVLLVLSMLSVGLLSGCNTVAGAGKDVKGAGEKVEDAARK
Download Length: 135 bp
>T119456 NZ_CP036255:c4684570-4684436 [Xanthomonas oryzae]
ATGAAGCGTGCAATTGTGCTGCTGGTGCTGTCCATGTTGTCGGTCGGTCTGCTGTCGGGCTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGAAGGGCGCCGGCGAGAAGGTGGAAGACGCAGCGCGTAAGTAA
ATGAAGCGTGCAATTGTGCTGCTGGTGCTGTCCATGTTGTCGGTCGGTCTGCTGTCGGGCTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGAAGGGCGCCGGCGAGAAGGTGGAAGACGCAGCGCGTAAGTAA
Antitoxin
Download Length: 51 a.a. Molecular weight: 5046.99 Da Isoelectric Point: 8.7942
>AT119456 WP_011407410.1 NZ_CP036255:c4684797-4684645 [Xanthomonas oryzae]
MKRLLTLMVLGLFSAGVMTGCNTVAGAGKDLQGAGGKVEKTAEKCSDGKC
MKRLLTLMVLGLFSAGVMTGCNTVAGAGKDLQGAGGKVEKTAEKCSDGKC
Download Length: 153 bp
>AT119456 NZ_CP036255:c4684797-4684645 [Xanthomonas oryzae]
ATGAAGCGACTGCTGACACTGATGGTGCTGGGCCTGTTTTCGGCCGGCGTGATGACGGGCTGTAACACCGTGGCTGGCGC
TGGCAAGGACTTGCAGGGCGCGGGTGGGAAGGTCGAGAAAACGGCCGAAAAATGCAGCGATGGTAAGTGCTGA
ATGAAGCGACTGCTGACACTGATGGTGCTGGGCCTGTTTTCGGCCGGCGTGATGACGGGCTGTAACACCGTGGCTGGCGC
TGGCAAGGACTTGCAGGGCGCGGGTGGGAAGGTCGAGAAAACGGCCGAAAAATGCAGCGATGGTAAGTGCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0C5UG40 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0C5V759 |