Detailed information of TA system TA119455

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/PIN-MazE
• Location: 4486494..4487127
• Replicon: chromosome
• Accession: NZ_CP036255
• Organism: Xanthomonas oryzae strain BB151-3

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: EYC56_RS21205
• Protein ID: WP_087785871.1
• Coordinates: 4486494..4486907 (-)
• Length: 138 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: EYC56_RS21210
• Protein ID: WP_087785868.1
• Coordinates: 4486894..4487127 (-)
• Length: 78 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
EYC56_RS21175	4481532..4482164	-	633	WP_131085497.1	flavin reductase family protein	-
EYC56_RS21185	4482316..4482897	-	582	WP_087785883.1	aminodeoxychorismate/anthranilate synthase component II	-
EYC56_RS21195	4484583..4486088	+	1506	WP_087785877.1	conjugal transfer protein TraG N-terminal domain-containing protein	-
EYC56_RS21200	4486090..4486464	-	375	WP_131083069.1	DUF3742 family protein	-
EYC56_RS21205	4486494..4486907	-	414	WP_087785871.1	PIN domain-containing protein	Toxin
EYC56_RS21210	4486894..4487127	-	234	WP_087785868.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	Antitoxin
EYC56_RS21215	4487664..4488704	+	1041	WP_131083067.1	hypothetical protein	-
EYC56_RS21220	4488764..4489252	-	489	WP_131083065.1	hypothetical protein	-
EYC56_RS24910	4489365..4489571	-	207	WP_207306723.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Genomic island	-	-	4484583..4500915	16332

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (8-119)

Antitoxin

• SpoVT-AbrB domain (5-45)

Sequences

Toxin

Protein

• Length: 138 a.a.
• Molecular weight: 15306.75 Da
• Isoelectric Point: 6.3237

>T119455 WP_087785871.1 NZ_CP036255:c4486907-4486494 [Xanthomonas oryzae]
MGAGKTKIFLDSNVVLYLLSQDAAKADDAEKLLQRRPVISVQVLNEVAHVCVRKLKMGWDEVGQFLALVREFCKVLPLTV
DVHDRARQLAERHQLSFYDACIVAAAAIEGCQTLYTEDMHHGLIIEESLSIRNPFAA

Nucleotide

• Length: 414 bp

>T119455 NZ_CP036255:c4486907-4486494 [Xanthomonas oryzae]
ATGGGCGCAGGTAAGACCAAAATTTTCCTCGACAGCAACGTCGTGCTCTACTTGCTGTCCCAGGACGCCGCGAAGGCGGA
TGATGCCGAGAAGCTGCTGCAGCGGCGCCCCGTTATCAGCGTGCAGGTGCTCAACGAGGTTGCTCATGTCTGCGTGCGTA
AGCTCAAGATGGGATGGGACGAGGTTGGCCAGTTCCTTGCACTGGTGCGTGAGTTCTGCAAGGTACTGCCCCTAACAGTC
GATGTGCACGACCGGGCTCGCCAGTTGGCCGAACGGCACCAACTCTCGTTCTATGATGCATGCATCGTTGCTGCCGCTGC
CATTGAAGGTTGCCAGACGCTGTACACCGAAGACATGCACCACGGCCTCATCATCGAAGAAAGTCTTTCGATCCGGAATC
CATTCGCCGCCTGA

Antitoxin

Protein

• Length: 78 a.a.
• Molecular weight: 8788.12 Da
• Isoelectric Point: 10.2843

>AT119455 WP_087785868.1 NZ_CP036255:c4487127-4486894 [Xanthomonas oryzae]
MQVAKWGNSLAVRLPANVVDALELREGDDIEIVVDEPRLFAVRKKPGPDAMLERLRAFRGKLPADFRFNREEANGRR

Nucleotide

• Length: 234 bp

>AT119455 NZ_CP036255:c4487127-4486894 [Xanthomonas oryzae]
ATGCAAGTGGCAAAGTGGGGCAACAGCTTGGCGGTACGCCTGCCTGCGAACGTGGTGGATGCCCTGGAGCTGCGCGAAGG
CGACGACATTGAGATCGTCGTGGACGAGCCGCGCCTTTTCGCGGTGCGCAAGAAGCCCGGTCCGGATGCCATGCTGGAGC
GGCTGCGCGCGTTTCGCGGCAAGCTGCCGGCAGATTTCAGGTTCAACCGGGAAGAGGCCAATGGGCGCAGGTAA