Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN-MazE
Location 4486494..4487127 Replicon chromosome
Accession NZ_CP036255
Organism Xanthomonas oryzae strain BB151-3

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag EYC56_RS21205 Protein ID WP_087785871.1
Coordinates 4486494..4486907 (-) Length 138 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag EYC56_RS21210 Protein ID WP_087785868.1
Coordinates 4486894..4487127 (-) Length 78 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EYC56_RS21175 4481532..4482164 - 633 WP_131085497.1 flavin reductase family protein -
EYC56_RS21185 4482316..4482897 - 582 WP_087785883.1 aminodeoxychorismate/anthranilate synthase component II -
EYC56_RS21195 4484583..4486088 + 1506 WP_087785877.1 conjugal transfer protein TraG N-terminal domain-containing protein -
EYC56_RS21200 4486090..4486464 - 375 WP_131083069.1 DUF3742 family protein -
EYC56_RS21205 4486494..4486907 - 414 WP_087785871.1 PIN domain-containing protein Toxin
EYC56_RS21210 4486894..4487127 - 234 WP_087785868.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
EYC56_RS21215 4487664..4488704 + 1041 WP_131083067.1 hypothetical protein -
EYC56_RS21220 4488764..4489252 - 489 WP_131083065.1 hypothetical protein -
EYC56_RS24910 4489365..4489571 - 207 WP_207306723.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 4484583..4500915 16332


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(8-119)

Antitoxin

SpoVT-AbrB domain

(5-45)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 15306.75 Da        Isoelectric Point: 6.3237

>T119455 WP_087785871.1 NZ_CP036255:c4486907-4486494 [Xanthomonas oryzae]
MGAGKTKIFLDSNVVLYLLSQDAAKADDAEKLLQRRPVISVQVLNEVAHVCVRKLKMGWDEVGQFLALVREFCKVLPLTV
DVHDRARQLAERHQLSFYDACIVAAAAIEGCQTLYTEDMHHGLIIEESLSIRNPFAA

Download         Length: 414 bp

>T119455 NZ_CP036255:c4486907-4486494 [Xanthomonas oryzae]
ATGGGCGCAGGTAAGACCAAAATTTTCCTCGACAGCAACGTCGTGCTCTACTTGCTGTCCCAGGACGCCGCGAAGGCGGA
TGATGCCGAGAAGCTGCTGCAGCGGCGCCCCGTTATCAGCGTGCAGGTGCTCAACGAGGTTGCTCATGTCTGCGTGCGTA
AGCTCAAGATGGGATGGGACGAGGTTGGCCAGTTCCTTGCACTGGTGCGTGAGTTCTGCAAGGTACTGCCCCTAACAGTC
GATGTGCACGACCGGGCTCGCCAGTTGGCCGAACGGCACCAACTCTCGTTCTATGATGCATGCATCGTTGCTGCCGCTGC
CATTGAAGGTTGCCAGACGCTGTACACCGAAGACATGCACCACGGCCTCATCATCGAAGAAAGTCTTTCGATCCGGAATC
CATTCGCCGCCTGA

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8788.12 Da        Isoelectric Point: 10.2843

>AT119455 WP_087785868.1 NZ_CP036255:c4487127-4486894 [Xanthomonas oryzae]
MQVAKWGNSLAVRLPANVVDALELREGDDIEIVVDEPRLFAVRKKPGPDAMLERLRAFRGKLPADFRFNREEANGRR

Download         Length: 234 bp

>AT119455 NZ_CP036255:c4487127-4486894 [Xanthomonas oryzae]
ATGCAAGTGGCAAAGTGGGGCAACAGCTTGGCGGTACGCCTGCCTGCGAACGTGGTGGATGCCCTGGAGCTGCGCGAAGG
CGACGACATTGAGATCGTCGTGGACGAGCCGCGCCTTTTCGCGGTGCGCAAGAAGCCCGGTCCGGATGCCATGCTGGAGC
GGCTGCGCGCGTTTCGCGGCAAGCTGCCGGCAGATTTCAGGTTCAACCGGGAAGAGGCCAATGGGCGCAGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References