Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN-MazE
Location 611571..612204 Replicon chromosome
Accession NZ_CP036254
Organism Xanthomonas oryzae strain BB156-2

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag EYC55_RS02880 Protein ID WP_087785871.1
Coordinates 611791..612204 (+) Length 138 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag EYC55_RS02875 Protein ID WP_087785868.1
Coordinates 611571..611804 (+) Length 78 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EYC55_RS24035 609127..609333 + 207 WP_207306723.1 hypothetical protein -
EYC55_RS02865 609431..609934 + 504 WP_207306784.1 hypothetical protein -
EYC55_RS02870 609994..611034 - 1041 WP_131083067.1 hypothetical protein -
EYC55_RS02875 611571..611804 + 234 WP_087785868.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
EYC55_RS02880 611791..612204 + 414 WP_087785871.1 PIN domain-containing protein Toxin
EYC55_RS02885 612234..612608 + 375 WP_131083069.1 DUF3742 family protein -
EYC55_RS02890 612610..614115 - 1506 WP_087785877.1 conjugal transfer protein TraG N-terminal domain-containing protein -
EYC55_RS24040 614710..614946 - 237 WP_131085499.1 hypothetical protein -
EYC55_RS02895 615801..616382 + 582 WP_087785883.1 aminodeoxychorismate/anthranilate synthase component II -
EYC55_RS02905 616534..617166 + 633 WP_131083071.1 flavin reductase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 594989..615024 20035


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(8-119)

Antitoxin

SpoVT-AbrB domain

(5-45)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 15306.75 Da        Isoelectric Point: 6.3237

>T119453 WP_087785871.1 NZ_CP036254:611791-612204 [Xanthomonas oryzae]
MGAGKTKIFLDSNVVLYLLSQDAAKADDAEKLLQRRPVISVQVLNEVAHVCVRKLKMGWDEVGQFLALVREFCKVLPLTV
DVHDRARQLAERHQLSFYDACIVAAAAIEGCQTLYTEDMHHGLIIEESLSIRNPFAA

Download         Length: 414 bp

>T119453 NZ_CP036254:611791-612204 [Xanthomonas oryzae]
ATGGGCGCAGGTAAGACCAAAATTTTCCTCGACAGCAACGTCGTGCTCTACTTGCTGTCCCAGGACGCCGCGAAGGCGGA
TGATGCCGAGAAGCTGCTGCAGCGGCGCCCCGTTATCAGCGTGCAGGTGCTCAACGAGGTTGCTCATGTCTGCGTGCGTA
AGCTCAAGATGGGATGGGACGAGGTTGGCCAGTTCCTTGCACTGGTGCGTGAGTTCTGCAAGGTACTGCCCCTAACAGTC
GATGTGCACGACCGGGCTCGCCAGTTGGCCGAACGGCACCAACTCTCGTTCTATGATGCATGCATCGTTGCTGCCGCTGC
CATTGAAGGTTGCCAGACGCTGTACACCGAAGACATGCACCACGGCCTCATCATCGAAGAAAGTCTTTCGATCCGGAATC
CATTCGCCGCCTGA

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8788.12 Da        Isoelectric Point: 10.2843

>AT119453 WP_087785868.1 NZ_CP036254:611571-611804 [Xanthomonas oryzae]
MQVAKWGNSLAVRLPANVVDALELREGDDIEIVVDEPRLFAVRKKPGPDAMLERLRAFRGKLPADFRFNREEANGRR

Download         Length: 234 bp

>AT119453 NZ_CP036254:611571-611804 [Xanthomonas oryzae]
ATGCAAGTGGCAAAGTGGGGCAACAGCTTGGCGGTACGCCTGCCTGCGAACGTGGTGGATGCCCTGGAGCTGCGCGAAGG
CGACGACATTGAGATCGTCGTGGACGAGCCGCGCCTTTTCGCGGTGCGCAAGAAGCCCGGTCCGGATGCCATGCTGGAGC
GGCTGCGCGCGTTTCGCGGCAAGCTGCCGGCAGATTTCAGGTTCAACCGGGAAGAGGCCAATGGGCGCAGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References