119447

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 944284..945758 Replicon chromosome
Accession NZ_CP036252
Organism Xanthomonas oryzae strain NJ611

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag EYC54_RS23505 Protein ID WP_207306992.1
Coordinates 945486..945758 (-) Length 91 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag EYC54_RS04630 Protein ID WP_131077866.1
Coordinates 944284..945354 (-) Length 357 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EYC54_RS04610 940161..940487 - 327 WP_131077863.1 hypothetical protein -
EYC54_RS04615 940791..942071 - 1281 WP_053502302.1 amidohydrolase family protein -
EYC54_RS04620 942068..943477 - 1410 WP_131077864.1 amidohydrolase -
EYC54_RS04625 943617..944177 + 561 WP_131077865.1 DUF924 family protein -
EYC54_RS04630 944284..945354 - 1071 WP_131077866.1 macro domain-containing protein Antitoxin
EYC54_RS23505 945486..945758 - 273 WP_207306992.1 DUF4433 domain-containing protein Toxin
EYC54_RS23510 945695..946003 - 309 WP_131077867.1 DUF4433 domain-containing protein -
EYC54_RS04645 946284..947210 - 927 WP_024710586.1 Grx4 family monothiol glutaredoxin -
EYC54_RS04650 947256..948047 + 792 WP_207306896.1 polysaccharide deacetylase family protein -
EYC54_RS04660 948350..949021 - 672 WP_024745633.1 class I SAM-dependent methyltransferase -
EYC54_RS04665 949344..949994 - 651 WP_131077868.1 SGNH/GDSL hydrolase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(3-90)

Antitoxin

Macro domain

(18-130)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10586.85 Da        Isoelectric Point: 6.2147

>T119447 WP_207306992.1 NZ_CP036252:c945758-945486 [Xanthomonas oryzae]
MLRNVNTGWGGIQRRTNEEIVILVSSLHHVAARGWSFLFTDSHAYYQLTNFYSDLANLDKIDWPLLQARDFRRDQEDPAK
FERYQAEALV

Download         Length: 273 bp

>T119447 NZ_CP036252:c945758-945486 [Xanthomonas oryzae]
ATGCTGCGCAACGTCAATACCGGCTGGGGAGGTATCCAACGACGGACGAACGAAGAGATCGTGATACTTGTTTCTAGCCT
CCACCATGTCGCAGCGCGAGGATGGTCTTTCTTGTTCACCGATAGCCACGCTTACTATCAGTTAACAAATTTCTATTCCG
ACTTGGCAAATCTGGACAAGATTGACTGGCCATTGCTACAGGCGCGCGATTTTCGGCGCGATCAAGAGGACCCGGCGAAG
TTCGAGCGATATCAAGCAGAAGCGCTGGTTTAA

Antitoxin


Download         Length: 357 a.a.        Molecular weight: 40096.36 Da        Isoelectric Point: 7.7875

>AT119447 WP_131077866.1 NZ_CP036252:c945354-944284 [Xanthomonas oryzae]
MITFTQGNLLQARVEALVNTVNTVGVMGKGIALMFKERFNENFLRYAAACKAKQVRTGKMFVTEANELNGPRWIINFPTK
QHWRGDSRIEWIAEGLQDLRFFLIENNVKSIAIPPLGAGNGGLDWADVRPLIEESLTGLDTKILVFEPISKYQNVAKRSG
VEKLTPARALIAELVRRYWVLGMECSLLEIQKLAWFLERNIERAGLPTMDLRFAPHKYGPYADRLRHLLNGLDGSYLHCD
KRIGDADPLDVIWFDDARKSFLQAYLKSEAKEYAPVLEATAALIDGFESPFGMELLATIDWLIAQADVSPQLANMRGGIR
RWPGGPEAAMRKDRLFDDRALSIALERLTSSANMVV

Download         Length: 1071 bp

>AT119447 NZ_CP036252:c945354-944284 [Xanthomonas oryzae]
ATGATTACGTTCACGCAAGGCAATTTGCTGCAGGCACGCGTAGAGGCGTTGGTCAATACAGTCAATACTGTCGGCGTGAT
GGGCAAGGGCATCGCGCTGATGTTCAAGGAGCGCTTCAACGAAAATTTCCTCCGATATGCTGCTGCCTGTAAGGCAAAGC
AAGTACGCACCGGCAAGATGTTCGTCACGGAAGCCAACGAGCTGAATGGACCACGCTGGATCATAAACTTCCCGACAAAG
CAGCACTGGCGTGGTGATTCGCGCATCGAATGGATTGCTGAGGGCCTGCAGGATCTGCGCTTCTTTCTGATCGAAAATAA
TGTCAAGTCGATTGCCATCCCGCCACTGGGCGCTGGCAATGGCGGCTTGGACTGGGCTGATGTTCGTCCACTGATAGAAG
AATCGCTGACTGGTTTAGATACCAAGATTCTTGTGTTCGAACCGATTTCGAAGTACCAAAACGTCGCAAAGCGCTCCGGC
GTGGAGAAGCTCACTCCGGCACGCGCATTGATTGCCGAACTGGTGCGTCGCTATTGGGTGTTAGGCATGGAATGCAGCCT
ACTTGAAATCCAGAAGCTGGCATGGTTCCTTGAACGCAACATCGAGCGCGCAGGCTTACCCACCATGGATTTGCGCTTTG
CGCCACACAAGTACGGACCATATGCCGATCGTCTCCGCCATCTACTGAACGGACTCGATGGCAGCTATCTGCACTGTGAC
AAGCGAATCGGCGACGCTGACCCACTAGATGTCATCTGGTTCGATGATGCTCGCAAAAGCTTTCTCCAAGCATATCTCAA
GAGCGAAGCTAAAGAGTACGCCCCGGTACTAGAAGCCACCGCAGCCTTAATTGATGGTTTTGAATCCCCTTTTGGCATGG
AGTTACTGGCAACGATTGACTGGCTAATTGCGCAAGCAGATGTCTCCCCGCAATTAGCGAACATGCGCGGGGGGATACGC
CGCTGGCCTGGTGGCCCAGAAGCAGCCATGCGAAAAGACAGACTGTTCGATGACCGCGCTCTAAGCATCGCTTTAGAACG
ACTAACATCAAGTGCAAACATGGTAGTTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References