Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 486363..486899 Replicon chromosome
Accession NZ_CP036246
Organism [Arcobacter] porcinus strain CCUG 56899

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag APORC_RS02585 Protein ID WP_066177392.1
Coordinates 486624..486899 (+) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag APORC_RS02580 Protein ID WP_066177388.1
Coordinates 486363..486623 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
APORC_RS02555 482470..483681 - 1212 WP_066387778.1 TolC family protein -
APORC_RS02560 483829..484260 + 432 WP_066171849.1 TonB-system energizer ExbB -
APORC_RS02565 484241..484618 + 378 WP_066171850.1 biopolymer transporter ExbD -
APORC_RS02570 484622..485287 + 666 WP_066387783.1 energy transducer TonB -
APORC_RS02575 485328..486251 - 924 WP_066171854.1 transporter -
APORC_RS02580 486363..486623 + 261 WP_066177388.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
APORC_RS02585 486624..486899 + 276 WP_066177392.1 type II toxin-antitoxin system YafQ family toxin Toxin
APORC_RS02590 486922..488373 - 1452 WP_066171856.1 acetyl-CoA carboxylase biotin carboxylase subunit -
APORC_RS02595 488640..489872 + 1233 WP_066387784.1 major outer membrane protein -
APORC_RS02600 490249..491124 + 876 WP_066387785.1 ORF6N domain-containing protein -
APORC_RS02605 491211..491441 + 231 WP_066387786.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(4-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(12-86)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10615.46 Da        Isoelectric Point: 9.5188

>T119423 WP_066177392.1 NZ_CP036246:486624-486899 [[Arcobacter] porcinus]
MLDLKIHKIFTKDLKKAQLNSTNSSKLFLYISLLLNNKELPKEAKNHSLKGEWEDTMEFHISGDLIVIYIIDDISLQLLR
IGTHSQLFKKF

Download         Length: 276 bp

>T119423 NZ_CP036246:486624-486899 [[Arcobacter] porcinus]
ATGCTTGATTTAAAAATTCATAAGATATTTACAAAGGATTTAAAAAAGGCTCAGTTGAATTCAACAAACTCATCAAAACT
ATTTTTATATATTTCACTACTTCTAAACAATAAAGAATTACCAAAAGAGGCAAAAAACCACTCTTTAAAAGGCGAATGGG
AAGATACAATGGAATTTCATATAAGTGGAGATTTAATTGTAATTTATATTATAGACGATATAAGCTTACAACTTTTAAGA
ATAGGAACTCATTCACAGCTTTTTAAAAAGTTTTAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9790.34 Da        Isoelectric Point: 10.0678

>AT119423 WP_066177388.1 NZ_CP036246:486363-486623 [[Arcobacter] porcinus]
MTTTSNKIRTNVYLDSTTKQKAQEIFKQYGLGLSEAFNIFLTQSVLEKGIPFEIKIPNEKTIEAIKDARANKNIKKVSLD
DLKKEL

Download         Length: 261 bp

>AT119423 NZ_CP036246:486363-486623 [[Arcobacter] porcinus]
ATGACTACAACTTCAAATAAAATAAGAACAAATGTATATCTTGATTCAACTACAAAACAAAAAGCTCAAGAGATTTTTAA
ACAATATGGTTTAGGTTTGAGTGAAGCTTTCAATATTTTTTTAACACAAAGTGTTCTAGAAAAAGGAATTCCTTTTGAAA
TAAAAATTCCAAATGAAAAAACAATAGAAGCTATAAAAGATGCAAGAGCAAATAAAAATATAAAAAAAGTTAGTTTAGAT
GATTTAAAAAAAGAGTTATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References