Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 2606654..2606804 | Replicon | chromosome |
Accession | NZ_CP036199 | ||
Organism | Leclercia adecarboxylata strain 16005813 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 2606690..2606792 (+) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 2606654..2606804 (-) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
EXN74_RS12585 | 2603130..2603792 | - | 663 | WP_103792074.1 | exodeoxyribonuclease X | - |
EXN74_RS12590 | 2603817..2604473 | - | 657 | WP_059307640.1 | carbon-nitrogen hydrolase family protein | - |
EXN74_RS12595 | 2604581..2604811 | - | 231 | WP_032611906.1 | DNA polymerase III subunit theta | - |
EXN74_RS12600 | 2604947..2605321 | + | 375 | WP_059307641.1 | CopC domain-containing protein YobA | - |
EXN74_RS12605 | 2605323..2606195 | + | 873 | WP_032611902.1 | copper homeostasis membrane protein CopD | - |
EXN74_RS12610 | 2606210..2606548 | + | 339 | WP_032611900.1 | YebY family protein | - |
- | 2606654..2606804 | - | 151 | - | - | Antitoxin |
- | 2606690..2606792 | + | 103 | - | - | Toxin |
EXN74_RS12615 | 2606949..2607896 | - | 948 | WP_130588624.1 | VirK/YbjX family protein | - |
EXN74_RS12620 | 2608075..2608719 | + | 645 | WP_059307643.1 | protein-serine/threonine phosphatase | - |
EXN74_RS12625 | 2608720..2608911 | - | 192 | WP_032611549.1 | YebW family protein | - |
EXN74_RS12630 | 2609015..2609254 | - | 240 | WP_032611546.1 | YebV family protein | - |
EXN74_RS12635 | 2609358..2610902 | - | 1545 | WP_186279181.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T119331 NZ_CP036199:2606690-2606792 [Leclercia adecarboxylata]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT119331 NZ_CP036199:c2606804-2606654 [Leclercia adecarboxylata]
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT