Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2606654..2606804 Replicon chromosome
Accession NZ_CP036199
Organism Leclercia adecarboxylata strain 16005813

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2606690..2606792 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2606654..2606804 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EXN74_RS12585 2603130..2603792 - 663 WP_103792074.1 exodeoxyribonuclease X -
EXN74_RS12590 2603817..2604473 - 657 WP_059307640.1 carbon-nitrogen hydrolase family protein -
EXN74_RS12595 2604581..2604811 - 231 WP_032611906.1 DNA polymerase III subunit theta -
EXN74_RS12600 2604947..2605321 + 375 WP_059307641.1 CopC domain-containing protein YobA -
EXN74_RS12605 2605323..2606195 + 873 WP_032611902.1 copper homeostasis membrane protein CopD -
EXN74_RS12610 2606210..2606548 + 339 WP_032611900.1 YebY family protein -
- 2606654..2606804 - 151 - - Antitoxin
- 2606690..2606792 + 103 - - Toxin
EXN74_RS12615 2606949..2607896 - 948 WP_130588624.1 VirK/YbjX family protein -
EXN74_RS12620 2608075..2608719 + 645 WP_059307643.1 protein-serine/threonine phosphatase -
EXN74_RS12625 2608720..2608911 - 192 WP_032611549.1 YebW family protein -
EXN74_RS12630 2609015..2609254 - 240 WP_032611546.1 YebV family protein -
EXN74_RS12635 2609358..2610902 - 1545 WP_186279181.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 103 bp

>T119331 NZ_CP036199:2606690-2606792 [Leclercia adecarboxylata]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 151 bp

>AT119331 NZ_CP036199:c2606804-2606654 [Leclercia adecarboxylata]
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References