Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 95190..95335 | Replicon | chromosome |
| Accession | NZ_CP036190 | ||
| Organism | Klebsiella pneumoniae strain BA34918 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 95226..95328 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 95190..95335 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EX353_RS00440 | 90320..92380 | + | 2061 | WP_130627726.1 | oligopeptidase B | - |
| EX353_RS00445 | 92384..93043 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| EX353_RS00450 | 93122..93352 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EX353_RS00455 | 93465..93839 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| EX353_RS00460 | 93843..94712 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| EX353_RS00465 | 94729..95067 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 95190..95335 | - | 146 | - | - | Antitoxin |
| - | 95226..95328 | + | 103 | - | - | Toxin |
| EX353_RS31485 | 95704..95847 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| EX353_RS00475 | 95952..96920 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| EX353_RS00480 | 97077..97730 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| EX353_RS00485 | 97727..97918 | - | 192 | WP_002911395.1 | YebW family protein | - |
| EX353_RS00490 | 98016..98255 | - | 240 | WP_002911393.1 | YebV family protein | - |
| EX353_RS00495 | 98371..99804 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T119311 NZ_CP036190:95226-95328 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT119311 NZ_CP036190:c95335-95190 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
