Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2023602..2023873 | Replicon | chromosome |
| Accession | NZ_CP036177 | ||
| Organism | Escherichia coli strain WCHEC025970 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2023732..2023835 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2023602..2023873 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EYD11_RS09770 | 2020157..2020819 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EYD11_RS09775 | 2020843..2021499 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EYD11_RS09780 | 2021601..2021831 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EYD11_RS09785 | 2021970..2022344 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EYD11_RS09790 | 2022348..2023220 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| EYD11_RS09795 | 2023233..2023574 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2023602..2023873 | - | 272 | - | - | Antitoxin |
| - | 2023732..2023835 | + | 104 | - | - | Toxin |
| EYD11_RS09800 | 2023970..2024626 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EYD11_RS09805 | 2024627..2024818 | - | 192 | WP_000457842.1 | YebW family protein | - |
| EYD11_RS09810 | 2024923..2025159 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EYD11_RS09815 | 2025277..2026716 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T119262 NZ_CP036177:2023732-2023835 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT119262 NZ_CP036177:c2023873-2023602 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
