Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2321084..2321249 | Replicon | chromosome |
| Accession | NZ_CP036175 | ||
| Organism | Klebsiella huaxiensis strain WCHKl090001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2321142..2321245 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2321084..2321249 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DA718_RS11045 | 2316211..2318271 | + | 2061 | WP_112213291.1 | oligopeptidase B | - |
| DA718_RS11050 | 2318278..2318937 | - | 660 | WP_112213292.1 | exodeoxyribonuclease X | - |
| DA718_RS11055 | 2319016..2319246 | - | 231 | WP_110274295.1 | DNA polymerase III subunit theta | - |
| DA718_RS11060 | 2319382..2319756 | + | 375 | WP_112213293.1 | CopC domain-containing protein YobA | - |
| DA718_RS11065 | 2319761..2320630 | + | 870 | WP_112213294.1 | copper homeostasis membrane protein CopD | - |
| DA718_RS11070 | 2320647..2320985 | + | 339 | WP_167492753.1 | YebY family protein | - |
| - | 2321084..2321249 | - | 166 | - | - | Antitoxin |
| - | 2321142..2321245 | + | 104 | - | - | Toxin |
| DA718_RS11075 | 2321564..2322535 | - | 972 | WP_112213295.1 | spore coat U domain-containing protein | - |
| DA718_RS11080 | 2322535..2324862 | - | 2328 | WP_112213296.1 | fimbrial biogenesis outer membrane usher protein | - |
| DA718_RS11085 | 2324865..2325629 | - | 765 | WP_112213297.1 | molecular chaperone | - |
| DA718_RS11090 | 2325647..2326165 | - | 519 | WP_112213495.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T119240 NZ_CP036175:2321142-2321245 [Klebsiella huaxiensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 166 bp
>AT119240 NZ_CP036175:c2321249-2321084 [Klebsiella huaxiensis]
AGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTGGAC
GAATAA
AGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTGGAC
GAATAA
