Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1374494..1374765 | Replicon | chromosome |
| Accession | NZ_CP035882 | ||
| Organism | Escherichia coli strain WS0115A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1374624..1374727 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1374494..1374765 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EW996_RS06490 | 1371049..1371711 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EW996_RS06495 | 1371735..1372391 | - | 657 | WP_074502798.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EW996_RS06500 | 1372493..1372723 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EW996_RS06505 | 1372862..1373236 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EW996_RS06510 | 1373240..1374112 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| EW996_RS06515 | 1374125..1374466 | + | 342 | WP_072145846.1 | YebY family protein | - |
| - | 1374494..1374765 | - | 272 | - | - | Antitoxin |
| - | 1374624..1374727 | + | 104 | - | - | Toxin |
| EW996_RS06520 | 1374862..1375518 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| EW996_RS06525 | 1375519..1375710 | - | 192 | WP_001313035.1 | YebW family protein | - |
| EW996_RS06530 | 1375815..1376051 | - | 237 | WP_001295499.1 | YebV family protein | - |
| EW996_RS06535 | 1376169..1377608 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118991 NZ_CP035882:1374624-1374727 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118991 NZ_CP035882:c1374765-1374494 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
