Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 114199..114470 | Replicon | chromosome |
| Accession | NZ_CP035879 | ||
| Organism | Escherichia coli strain DS26-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 114329..114432 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 114199..114470 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EW997_RS00665 | 110754..111416 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EW997_RS00670 | 111440..112096 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EW997_RS00675 | 112198..112428 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EW997_RS00680 | 112567..112941 | + | 375 | WP_001362814.1 | CopC domain-containing protein YobA | - |
| EW997_RS00685 | 112945..113817 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EW997_RS00690 | 113830..114171 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 114199..114470 | - | 272 | - | - | Antitoxin |
| - | 114329..114432 | + | 104 | - | - | Toxin |
| EW997_RS00695 | 114567..115223 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EW997_RS00700 | 115224..115415 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EW997_RS00705 | 115520..115756 | - | 237 | WP_001295499.1 | YebV family protein | - |
| EW997_RS00710 | 115874..117313 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118962 NZ_CP035879:114329-114432 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118962 NZ_CP035879:c114470-114199 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
