Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 493917..494188 | Replicon | chromosome |
| Accession | NZ_CP035870 | ||
| Organism | Escherichia coli strain E2528-C1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 494047..494150 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 493917..494188 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EW999_RS02520 | 490472..491134 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| EW999_RS02525 | 491158..491814 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EW999_RS02530 | 491916..492146 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EW999_RS02535 | 492285..492659 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EW999_RS02540 | 492663..493535 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| EW999_RS02545 | 493548..493889 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 493917..494188 | - | 272 | - | - | Antitoxin |
| - | 494047..494150 | + | 104 | - | - | Toxin |
| EW999_RS02550 | 494285..494941 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| EW999_RS02555 | 494942..495133 | - | 192 | WP_001338167.1 | YebW family protein | - |
| EW999_RS02560 | 495238..495474 | - | 237 | WP_001338166.1 | YebV family protein | - |
| EW999_RS02565 | 495592..497031 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 425308..510026 | 84718 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118910 NZ_CP035870:494047-494150 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118910 NZ_CP035870:c494188-493917 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
