Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1676821..1677092 | Replicon | chromosome |
| Accession | NZ_CP035865 | ||
| Organism | Escherichia coli strain E275 a | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1676951..1677054 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1676821..1677092 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXE34_RS07970 | 1673376..1674038 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| EXE34_RS07975 | 1674062..1674718 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EXE34_RS07980 | 1674820..1675050 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EXE34_RS07985 | 1675189..1675563 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EXE34_RS07990 | 1675567..1676439 | + | 873 | WP_159382367.1 | copper homeostasis membrane protein CopD | - |
| EXE34_RS07995 | 1676452..1676793 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1676821..1677092 | - | 272 | - | - | Antitoxin |
| - | 1676951..1677054 | + | 104 | - | - | Toxin |
| EXE34_RS08000 | 1677189..1677845 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| EXE34_RS08005 | 1677846..1678037 | - | 192 | WP_001338167.1 | YebW family protein | - |
| EXE34_RS08010 | 1678142..1678378 | - | 237 | WP_001338166.1 | YebV family protein | - |
| EXE34_RS08015 | 1678496..1679935 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118882 NZ_CP035865:1676951-1677054 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118882 NZ_CP035865:c1677092-1676821 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
