Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | paaR-paaA-parE/- |
| Location | 3086015..3086486 | Replicon | chromosome |
| Accession | NZ_CP035860 | ||
| Organism | Escherichia coli strain TD225-C4 | ||
Toxin (Protein)
| Gene name | parE_1 | Uniprot ID | A0A0D7C2L1 |
| Locus tag | EXA00_RS15380 | Protein ID | WP_001303511.1 |
| Coordinates | 3086208..3086486 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | paaA | Uniprot ID | Q8XAD5 |
| Locus tag | EXA00_RS15375 | Protein ID | WP_001302048.1 |
| Coordinates | 3086015..3086206 (+) | Length | 64 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA00_RS15335 (3081463) | 3081463..3081942 | + | 480 | WP_000715488.1 | hypothetical protein | - |
| EXA00_RS15340 (3081948) | 3081948..3082472 | - | 525 | WP_235834910.1 | antiterminator Q family protein | - |
| EXA00_RS15345 (3082631) | 3082631..3083047 | - | 417 | WP_032201964.1 | DUF977 family protein | - |
| EXA00_RS15350 (3083062) | 3083062..3083808 | - | 747 | WP_000788772.1 | ATP-binding protein | - |
| EXA00_RS15355 (3083815) | 3083815..3084780 | - | 966 | WP_169029974.1 | hypothetical protein | - |
| EXA00_RS15360 (3084801) | 3084801..3085226 | - | 426 | WP_032201966.1 | toxin YdaT family protein | - |
| EXA00_RS15365 (3085223) | 3085223..3085525 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| EXA00_RS15370 (3085623) | 3085623..3085994 | + | 372 | WP_001169687.1 | hypothetical protein | - |
| EXA00_RS15375 (3086015) | 3086015..3086206 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin |
| EXA00_RS15380 (3086208) | 3086208..3086486 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| EXA00_RS15385 (3086774) | 3086774..3086929 | + | 156 | WP_000379557.1 | DUF1391 family protein | - |
| EXA00_RS15390 (3087089) | 3087089..3087307 | + | 219 | WP_001171921.1 | protein YdfC | - |
| EXA00_RS15395 (3087330) | 3087330..3087737 | + | 408 | WP_000394517.1 | hypothetical protein | - |
| EXA00_RS15400 (3087715) | 3087715..3087948 | - | 234 | WP_001735122.1 | hypothetical protein | - |
| EXA00_RS15405 (3088479) | 3088479..3088667 | + | 189 | WP_000449197.1 | cell division inhibition protein DicB | - |
| EXA00_RS15410 (3088664) | 3088664..3088867 | + | 204 | WP_001098304.1 | DUF1482 family protein | - |
| EXA00_RS15415 (3088948) | 3088948..3091419 | + | 2472 | WP_216334070.1 | exonuclease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10661.25 Da Isoelectric Point: 5.5647
>T118871 WP_001303511.1 NZ_CP035860:3086208-3086486 [Escherichia coli]
MLPVLWLESADTDLDDITSYIARFDIDAAERLWQRLRGCVLPLSEHPYLYPPSDRVPGLREIVAHPNYIILYRVTTSSVE
VVNVIHARRQFP
MLPVLWLESADTDLDDITSYIARFDIDAAERLWQRLRGCVLPLSEHPYLYPPSDRVPGLREIVAHPNYIILYRVTTSSVE
VVNVIHARRQFP
Download Length: 279 bp
>T118871 NZ_CP035860:3086208-3086486 [Escherichia coli]
ATGTTACCCGTGTTATGGCTTGAAAGCGCAGATACCGACCTAGATGATATAACTAGTTATATTGCTCGTTTCGACATAGA
TGCGGCTGAACGCTTATGGCAGCGATTAAGGGGTTGTGTGCTGCCGTTATCCGAACATCCGTATTTATACCCACCAAGCG
ACAGAGTACCTGGCTTGCGTGAGATTGTAGCCCACCCTAACTATATAATTCTATACCGCGTAACAACATCAAGCGTTGAA
GTAGTAAACGTGATCCACGCAAGACGCCAGTTTCCCTAA
ATGTTACCCGTGTTATGGCTTGAAAGCGCAGATACCGACCTAGATGATATAACTAGTTATATTGCTCGTTTCGACATAGA
TGCGGCTGAACGCTTATGGCAGCGATTAAGGGGTTGTGTGCTGCCGTTATCCGAACATCCGTATTTATACCCACCAAGCG
ACAGAGTACCTGGCTTGCGTGAGATTGTAGCCCACCCTAACTATATAATTCTATACCGCGTAACAACATCAAGCGTTGAA
GTAGTAAACGTGATCCACGCAAGACGCCAGTTTCCCTAA
Antitoxin
Download Length: 64 a.a. Molecular weight: 7463.47 Da Isoelectric Point: 8.6828
>AT118871 WP_001302048.1 NZ_CP035860:3086015-3086206 [Escherichia coli]
MNRALSPMVSEFETIEQENSYNEWLRAKVATSLADPRPAIPHDEVERRMAERFAKMRKERSKQ
MNRALSPMVSEFETIEQENSYNEWLRAKVATSLADPRPAIPHDEVERRMAERFAKMRKERSKQ
Download Length: 192 bp
>AT118871 NZ_CP035860:3086015-3086206 [Escherichia coli]
ATGAATAGAGCCCTTTCACCAATGGTTTCTGAATTTGAAACCATTGAACAAGAAAACAGTTACAACGAATGGCTGCGTGC
GAAAGTAGCAACGAGCCTTGCAGATCCGCGCCCAGCAATTCCCCATGACGAAGTTGAGCGCAGAATGGCAGAACGCTTTG
CTAAGATGCGCAAGGAACGGAGCAAGCAGTAA
ATGAATAGAGCCCTTTCACCAATGGTTTCTGAATTTGAAACCATTGAACAAGAAAACAGTTACAACGAATGGCTGCGTGC
GAAAGTAGCAACGAGCCTTGCAGATCCGCGCCCAGCAATTCCCCATGACGAAGTTGAGCGCAGAATGGCAGAACGCTTTG
CTAAGATGCGCAAGGAACGGAGCAAGCAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|