Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 1212116..1212642 | Replicon | chromosome |
| Accession | NZ_CP035855 | ||
| Organism | Escherichia coli TW11681 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | EXE31_RS06015 | Protein ID | WP_000323025.1 |
| Coordinates | 1212116..1212403 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | EXE31_RS06020 | Protein ID | WP_000534858.1 |
| Coordinates | 1212403..1212642 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXE31_RS05965 (1207140) | 1207140..1207355 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| EXE31_RS05970 (1207575) | 1207575..1207745 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| EXE31_RS05975 (1208109) | 1208109..1208324 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| EXE31_RS05980 (1208625) | 1208625..1208837 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| EXE31_RS05985 (1208892) | 1208892..1208981 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| EXE31_RS05990 (1209259) | 1209259..1210011 | - | 753 | WP_001047135.1 | antitermination protein | - |
| EXE31_RS05995 (1210025) | 1210025..1211074 | - | 1050 | WP_001265200.1 | DUF968 domain-containing protein | - |
| EXE31_RS06000 (1211076) | 1211076..1211354 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| EXE31_RS06005 (1211421) | 1211421..1211672 | - | 252 | WP_000980994.1 | protein Rem | - |
| EXE31_RS06010 (1211889) | 1211889..1212044 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| EXE31_RS06015 (1212116) | 1212116..1212403 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| EXE31_RS06020 (1212403) | 1212403..1212642 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| EXE31_RS06025 (1212667) | 1212667..1212876 | + | 210 | Protein_1182 | hypothetical protein | - |
| EXE31_RS06030 (1212875) | 1212875..1212946 | - | 72 | Protein_1183 | transcriptional regulator | - |
| EXE31_RS06035 (1212998) | 1212998..1214211 | + | 1214 | WP_164544915.1 | IS3 family transposase | - |
| EXE31_RS06040 (1214254) | 1214254..1214316 | - | 63 | Protein_1185 | dicB transcriptional regulator DicC | - |
| EXE31_RS06045 (1214400) | 1214400..1214807 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| EXE31_RS06050 (1214974) | 1214974..1215129 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| EXE31_RS06055 (1215131) | 1215131..1215706 | + | 576 | WP_000344953.1 | hypothetical protein | - |
| EXE31_RS06060 (1216193) | 1216193..1216381 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| EXE31_RS06065 (1216378) | 1216378..1216569 | + | 192 | WP_001083278.1 | lysis protein YdfD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1191041..1233789 | 42748 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T118826 WP_000323025.1 NZ_CP035855:c1212403-1212116 [Escherichia coli TW11681]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T118826 NZ_CP035855:c1212403-1212116 [Escherichia coli TW11681]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT118826 WP_000534858.1 NZ_CP035855:c1212642-1212403 [Escherichia coli TW11681]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT118826 NZ_CP035855:c1212642-1212403 [Escherichia coli TW11681]
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|