Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3429691..3429962 | Replicon | chromosome |
| Accession | NZ_CP035850 | ||
| Organism | Escherichia coli strain TW10590 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3429821..3429924 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3429691..3429962 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXE32_RS16480 | 3426246..3426908 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EXE32_RS16485 | 3426932..3427588 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EXE32_RS16490 | 3427690..3427920 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EXE32_RS16495 | 3428059..3428433 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EXE32_RS16500 | 3428437..3429309 | + | 873 | WP_000879279.1 | copper homeostasis membrane protein CopD | - |
| EXE32_RS16505 | 3429322..3429663 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 3429691..3429962 | - | 272 | - | - | Antitoxin |
| - | 3429821..3429924 | + | 104 | - | - | Toxin |
| EXE32_RS16510 | 3430059..3430715 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EXE32_RS16515 | 3430716..3430907 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EXE32_RS16520 | 3431012..3431248 | - | 237 | WP_001295499.1 | YebV family protein | - |
| EXE32_RS16525 | 3431366..3432805 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118804 NZ_CP035850:3429821-3429924 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118804 NZ_CP035850:c3429962-3429691 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
