Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4803263..4803534 | Replicon | chromosome |
| Accession | NZ_CP035846 | ||
| Organism | Escherichia coli strain TW10598 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4803393..4803496 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4803263..4803534 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA01_RS23355 | 4799818..4800480 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| EXA01_RS23360 | 4800504..4801160 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EXA01_RS23365 | 4801262..4801492 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EXA01_RS23370 | 4801631..4802005 | + | 375 | WP_000168746.1 | CopC domain-containing protein YobA | - |
| EXA01_RS23375 | 4802009..4802881 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| EXA01_RS23380 | 4802894..4803235 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4803263..4803534 | - | 272 | - | - | Antitoxin |
| - | 4803393..4803496 | + | 104 | - | - | Toxin |
| EXA01_RS23385 | 4803631..4804287 | + | 657 | WP_000812772.1 | protein-serine/threonine phosphatase | - |
| EXA01_RS23390 | 4804288..4804479 | - | 192 | WP_001338167.1 | YebW family protein | - |
| EXA01_RS23395 | 4804584..4804820 | - | 237 | WP_001338166.1 | YebV family protein | - |
| EXA01_RS23400 | 4804938..4806377 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118779 NZ_CP035846:4803393-4803496 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118779 NZ_CP035846:c4803534-4803263 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
