Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4606018..4606289 | Replicon | chromosome |
| Accession | NZ_CP035841 | ||
| Organism | Escherichia coli strain TW10722 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4606148..4606251 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4606018..4606289 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA02_RS22555 | 4602573..4603235 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EXA02_RS22560 | 4603259..4603915 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EXA02_RS22565 | 4604017..4604247 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EXA02_RS22570 | 4604386..4604760 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EXA02_RS22575 | 4604764..4605636 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| EXA02_RS22580 | 4605649..4605990 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4606018..4606289 | - | 272 | - | - | Antitoxin |
| - | 4606148..4606251 | + | 104 | - | - | Toxin |
| EXA02_RS22585 | 4606386..4607042 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| EXA02_RS22590 | 4607043..4607234 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EXA02_RS22595 | 4607339..4607575 | - | 237 | WP_001295499.1 | YebV family protein | - |
| EXA02_RS22600 | 4607693..4609132 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118749 NZ_CP035841:4606148-4606251 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118749 NZ_CP035841:c4606289-4606018 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
