Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1065450..1065721 | Replicon | chromosome |
| Accession | NZ_CP035836 | ||
| Organism | Escherichia coli strain WS1933D | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1065488..1065591 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1065450..1065721 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA03_RS05450 | 1062607..1064046 | + | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EXA03_RS05455 | 1064164..1064400 | + | 237 | WP_001295499.1 | YebV family protein | - |
| EXA03_RS05460 | 1064505..1064696 | + | 192 | WP_001313035.1 | YebW family protein | - |
| EXA03_RS05465 | 1064697..1065353 | - | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| - | 1065450..1065721 | + | 272 | - | - | Antitoxin |
| - | 1065488..1065591 | - | 104 | - | - | Toxin |
| EXA03_RS05470 | 1065749..1066090 | - | 342 | WP_000976472.1 | YebY family protein | - |
| EXA03_RS05475 | 1066103..1066975 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| EXA03_RS05480 | 1066979..1067353 | - | 375 | WP_000168736.1 | CopC domain-containing protein YobA | - |
| EXA03_RS05485 | 1067492..1067722 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EXA03_RS05490 | 1067824..1068480 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EXA03_RS05495 | 1068504..1069166 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118703 NZ_CP035836:c1065591-1065488 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118703 NZ_CP035836:1065450-1065721 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
